Re: [PyMOL] Question about visualisation of the spheres objects on PNG image

2021-03-01 Thread Ali Saad Kusay
Hi Jeff, That would be cmd.disable("object name") # https://pymolwiki.org/index.php/Disable Cheers, Ali On 1/3/21, 9:05 pm, "Jeff Saxon" wrote: Thank you very much, Ali! Yes, actually, I suppose I have set up vdw radii using those commands, considering specific selections,e.g

Re: [PyMOL] Question about visualisation of the spheres objects on PNG image

2021-03-01 Thread Jeff Saxon
Thank you very much, Ali! Yes, actually, I suppose I have set up vdw radii using those commands, considering specific selections,e.g this is part of my pymol script that I am using in bash. $pymol -c -d " from pymol import cmd cmd.load('${storage}/${syst_name}/all_clusters.pdb')

Re: [PyMOL] Question about visualisation of the spheres objects on PNG image

2021-02-26 Thread Ali Saad Kusay
Hi Jeff, The sphere size is controlled by the vdw property, to change it: alter *, vdw=1.0 # this will set the sphere size to be equal for all atom i.e. hydrogens atom would be same size as carbon you also need to use the "rebuild" command to implement the changes At this point, you can