Re: [PyMOL] spectrum and the default minimum and maximum values

2015-07-07 Thread Tsjerk Wassenaar
Hi Emily, No, it takes them from the selection. Cheers, Tsjerk On Jul 7, 2015 4:09 PM, Emilia C. Arturo (Emily) ec...@drexel.edu wrote: To be extra clear/redundant: The default value passed is None. If Pymol finds that the argument is None, it takes the minimum/maximum value from the

Re: [PyMOL] spectrum and the default minimum and maximum values

2015-07-07 Thread Tsjerk Wassenaar
Hi Emily, The default value passed is None. If Pymol finds that the argument is None, it takes the minimum/maximum value from the list of values, otherwise it will take the value provided. The interpolation is indeed linear. Hope it helps, Tsjerk On Tue, Jul 7, 2015 at 4:11 AM, Emilia C.

Re: [PyMOL] spectrum and the default minimum and maximum values

2015-07-07 Thread Emilia C. Arturo (Emily)
To be extra clear/redundant: The default value passed is None. If Pymol finds that the argument is None, it takes the minimum/maximum value from the list of values, ...do you mean that it takes the minimum/maximum values from the list of b-values from within that pdb file? So that for each pdb

Re: [PyMOL] spectrum and the default minimum and maximum values

2015-07-06 Thread Emilia C. Arturo (Emily)
Hello All. Can anyone tell me what values are assigned by default to the minimum and maximum arguments of the spectrum command? To be clear, I know how to change the value of these arguments, but what does PyMOL assign to these values if one calls the spectrum tool using the pull-down menus to

Re: [PyMOL] spectrum

2009-11-09 Thread Robert Campbell
Hi Mark and Sean, On Sat, 07 Nov 2009 10:05:59 -0500 Sean Law magic...@hotmail.com wrote: Sorry for the earlier confusion. I think I found a hackish way of getting a gray spectrum: snip Sean's extensive explanation I know I'm biased, since I wrote the color_b.py script, but I fail to see

Re: [PyMOL] Spectrum

2009-11-09 Thread Robert Campbell
Hi Sean, On Mon, 09 Nov 2009 10:58:53 -0500 Sean Law magic...@hotmail.com wrote: Robert, I would have to agree with you. I've used many of your scripts and have also learned a lot from them and think that the color B script is pretty robust and helpful. Thanks. I could be wrong but