Re: [PyMOL] asymmetric transformation matrices

2009-11-09 Thread Tsjerk Wassenaar
Hi Thomas, Say, the first system is x and the second y, where y=R(x+s) is the first transformation. Then the reverse transformation follows as y = R(x + s) y = Rx + Rs Rx = y - Rs x = t(R)(y-Rs) Note that that is also equal to: x = t(R)y - s Hope it helps, Tsjerk On Mon, Nov 9, 2009 at

Re: [PyMOL] spectrum

2009-11-09 Thread Robert Campbell
Hi Mark and Sean, On Sat, 07 Nov 2009 10:05:59 -0500 Sean Law magic...@hotmail.com wrote: Sorry for the earlier confusion. I think I found a hackish way of getting a gray spectrum: snip Sean's extensive explanation I know I'm biased, since I wrote the color_b.py script, but I fail to see

Re: [PyMOL] asymmetric transformation matrices

2009-11-09 Thread Thomas Evangelidis
As Tsjerk pointed out, there was a mistake in the code. Just for the record this is the right function: pdb2entry = { 1ONE: 1ONE_A, 2ONE: 2ONE_A } # a function to measure Ca distances of oposite pairs of superimpossed chains (the proteins must have the same aa composition) def

[PyMOL] Fwd: asymmetric transformation matrices

2009-11-09 Thread Tsjerk Wassenaar
Hmm, this should've been replied to the list. The info may be useful to others. Tsjerk -- Forwarded message -- From: Tsjerk Wassenaar tsje...@gmail.com Date: Mon, Nov 9, 2009 at 5:02 PM Subject: Re: [PyMOL] asymmetric transformation matrices To: Thomas Evangelidis

Re: [PyMOL] Spectrum

2009-11-09 Thread Robert Campbell
Hi Sean, On Mon, 09 Nov 2009 10:58:53 -0500 Sean Law magic...@hotmail.com wrote: Robert, I would have to agree with you. I've used many of your scripts and have also learned a lot from them and think that the color B script is pretty robust and helpful. Thanks. I could be wrong but