Re: [PyMOL] Fog and ray-tracing

2003-12-05 Thread Robert Campbell
Hi Loic, * Loic BERTRAND l...@cryst.bioc.cam.ac.uk [2003-12-03 18:42] wrote: I want to generate a ray-traced image with a white background and a very strong fog effect. I tried to play around with the ray_trace_fog, ray_trace_fog_start and fog parameters but could not manage to do it.

[PyMOL] Unable to read Gamess-US output

2003-12-05 Thread Jerome Levesque
Hello, I am using GAMESS-US (not PC-GAMESS) on Linux to model very small molecules. When I try to load a GAMESS .dat file into PyMOL, it does not complain at all, but does not show anything either. There isn't even a new object appearing in the right part of the PyMOL visualization window. I

[PyMOL] dial boxes on SGI

2003-12-05 Thread Hanspeter Niederstrasser
Do dialboxes that are sold with SGIs work for moving molecules around in PyMOL? They don't seem to do anything out of the box. Hanspeter -- Hanspeter Niederstrasser Nogales Lab nie...@ocf.berkeley.eduhttp://cryoem.berkeley.edu/~nieder/

[PyMOL] Unable to read Gamess-US output

2003-12-05 Thread Jerome Levesque
Hello, I am using GAMESS-US (not PC-GAMESS) on Linux to model very small molecules. When I try to load a GAMESS .dat file into PyMOL, it does not complain at all, but does not show anything either. There isn't even a new object appearing in the right part of the PyMOL visualization window. I