thanks so much, this did the trick!
Jill
Gabor Grothendieck wrote:
Try this which assumes that comma does not appear in any of the strings.
You can substitute a different non-appearing character if a comma does
appear in any of the strings:
strsplit(gsub(string,, string, paste(vec,
Thanks, however the group sizes are really big (each a,b,c.. category has
60,000 observations). Its hard to see whats going on withe the jittered
stripchart, i just get big black blobs.
Any other suggestions?
Peter Ehlers wrote:
If your group sizes are not too large, I would use jittered
You could try density plots:
If dat is your dataframe, y is your numerical vector and
g is your factor,
library(lattice)
trellis.device(height=9, width=7)
densityplot(~g|y, data=dat, plot.points=FALSE, layout=c(1,4))
See ?densityplot, ?panel.densityplot
-Peter Ehlers
DispersionMap wrote:
hi again
I will try this time to explain my problem clearly
I have the following data from the file skiing.csv (3 first rows)
protokollid datestart end
14 2/23/2009 8:50:10 15:17:30
24 2/24/2009 9:47:00 13:52:25
35 3/22/2009 8:51:25
Whoops, that should be
densityplot(~y|g, data=dat, plot.points=FALSE, layout=c(1,4))
-Peter Ehlers
Peter Ehlers wrote:
You could try density plots:
If dat is your dataframe, y is your numerical vector and
g is your factor,
library(lattice)
trellis.device(height=9, width=7)
I've written a very simple bit of code to plot a trajectory using rgl:
x -
(c(0,-5.947,-11.496,-16.665,-21.474,-25.947,-30.116,-34.017,-37.684,-41.148,-44.435,-47.568,-50.567,-53.448,-56.223,-58.906))
y -
On 05/12/2009 3:07 AM, Colin Wyers wrote:
I've written a very simple bit of code to plot a trajectory using rgl:
x -
(c(0,-5.947,-11.496,-16.665,-21.474,-25.947,-30.116,-34.017,-37.684,-41.148,-44.435,-47.568,-50.567,-53.448,-56.223,-58.906))
y -
Thanks, ill give them whirl...when i was installing the lattice package i got
the error in bold below...why does it say permission denied and what effect
does this have?
utils:::menuInstallLocal()
package 'lattice' successfully unpacked and MD5 sums checked
updating HTML package descriptions
Try this:
Lines - protokollid datestart end
4 2/23/2009 8:50:10 15:17:30
4 2/24/2009 9:47:00 13:52:25
5 3/22/2009 8:51:25 12:00:05
library(chron)
skiers - read.table(textConnection(Lines), header = TRUE, as.is = TRUE)
skiers - transform(skiers, date = dates(date),
start
A different approach than those other people listed would be to change
the vector into a matrix (by setting its dimension, if you don't need
to keep the original vector) and then applying paste along one of the
dimensions. Obviously, you'd need to pad the end of the vector with
NAs or empty
Try this also:
sapply(grep(string$, vec), function(idx)paste(vec[idx + 0:1], collapse = ))
On Fri, Dec 4, 2009 at 11:42 PM, Jill Hollenbach jil...@sbcglobal.net wrote:
Hi all,
I would like to combine elements of a vector:
vec - c(astring, b, cstring, d, e)
vec
[1] astring b
Hi,
I have a problem with R CMD BATCH, because I created a .bat file to run a
script:
C:\R\R-2.9.2\bin\R CMD BATCH C:\Scrip_test.R
It work perfectly but after 3 lines of script there is a line with a nls()
function that cannot be fitted and this end in an error message.
I'm not bother by the
Fabio,
If you're not using the nls() function's result, then why don't you comment
it out from the script? That way, there will be no error and the script will
work fine.
Please post your script if you need further help.
Veronesi, Fabio wrote:
Hi,
I have a problem with R CMD BATCH,
On Dec 5, 2009, at 9:21 AM, Veronesi, Fabio wrote:
Hi,
I have a problem with R CMD BATCH, because I created a .bat file to
run a script:
C:\R\R-2.9.2\bin\R CMD BATCH C:\Scrip_test.R
It work perfectly but after 3 lines of script there is a line with a
nls() function that cannot be fitted
Your R code looks correct.
Because this is a straightforward calculation, I would be surprised if there
were any differences with SPSS. It may be worthwhile to check
if SPSS gives partial correlations or semipartial correlations. For example,
if you take the correlation between
py - resid(lm(y
I apologize for how basic a question this is. I am a Stata user who
has begun using R, and the syntax differences still trip me up. The
most basic questions, involving as they do general terms, can be the
hardest to find solutions for through search.
Assume for the moment that I have a dataset
Hi,
Try this,
cor(pollute[ ,c(Pollution,Temp,Industry)])
and ?[ in particular,
Character vectors will be matched to the names of the object
HTH,
baptiste
2009/12/5 John-Paul Ferguson ferguson_john-p...@gsb.stanford.edu:
I apologize for how basic a question this is. I am a Stata user who
pkg:lattice is installed as part of the base R distribution.
You don't need to install it.
DispersionMap wrote:
Thanks, ill give them whirl...when i was installing the lattice package i got
the error in bold below...why does it say permission denied and what effect
does this have?
I guess that
As baptiste noted, you can do
cor(pollute[ ,c(Pollution,Temp,Industry)]).
But
cor(pollute[,Pollution:Industry])
will not work. For that you can do
cor(pollute[
,which(names(pollute)==Pollution):which(names(pollute)==Industry)])
-Ista
On Sat, Dec 5, 2009 at 11:22 AM, John-Paul Ferguson
Dear John-Paul,
Take a look at https://stat.ethz.ch/pipermail/r-help/2009-July/204027.html It
contains different ways to do (in part) what you want.
HTH,
Jorge
On Sat, Dec 5, 2009 at 11:22 AM, John-Paul Ferguson wrote:
I apologize for how basic a question this is. I am a Stata user who
has
Alternatively, you can use subset(), which supports the : operator
for the 'select' argument:
cor(subset(iris, select = Sepal.Length:Petal.Length))
Sepal.Length Sepal.Width Petal.Length
Sepal.Length1.000 -0.11756980.8717538
Sepal.Width-0.1175698 1.000
On Dec 5, 2009, at 11:30 AM, baptiste auguie wrote:
Hi,
Try this,
cor(pollute[ ,c(Pollution,Temp,Industry)])
and ?[ in particular,
Character vectors will be matched to the names of the object
John-Paul;
In the time it took me to compose this, I see that others have already
pointed out
Holy Cats, those were four quick responses! And the question,
basically, is answered:
1. When in doubt, try quoting column names where you would try using
unquoted column indexes.
2. Subset() seems, overall, the most flexible analog to Stata's
variable-referencing syntax.
I appreciate the help.
Dear List,
i have a question concerning these device-related function (i.e.
pdf(),jpeg(), etc.). Currently, I plot three graphs, one below the other
into a /single/ window by using par(). I would like to save this figure
now as JPEG or PNG. By now, code looks as follows:
jepg(...)
par(...)
Greetings R community:
Since R 2.9.0+ I have noticed that when I use the default cairo x11()
device, if I obscure a device window (or switch virtual desktops), the
window does not refresh. I need to move it or resize it to make it
redraw. This behavior did not happen before 2.9.0. It also
im using w7 ultimate
Peter Ehlers wrote:
pkg:lattice is installed as part of the base R distribution.
You don't need to install it.
DispersionMap wrote:
Thanks, ill give them whirl...when i was installing the lattice package i
got
the error in bold below...why does it say permission
On Dec 5, 2009, at 11:21 AM, Walther, Alexander wrote:
Dear List,
i have a question concerning these device-related function (i.e.
pdf(),jpeg(), etc.). Currently, I plot three graphs, one below the
other
into a /single/ window by using par(). I would like to save this
figure
now as JPEG
On 05/12/2009 12:21 PM, Walther, Alexander wrote:
Dear List,
i have a question concerning these device-related function (i.e.
pdf(),jpeg(), etc.). Currently, I plot three graphs, one below the other
into a /single/ window by using par(). I would like to save this figure
now as JPEG or PNG. By
On Dec 5, 2009, at 11:34 AM, Marc Schwartz wrote:
On Dec 5, 2009, at 11:21 AM, Walther, Alexander wrote:
Dear List,
i have a question concerning these device-related function (i.e.
pdf(),jpeg(), etc.). Currently, I plot three graphs, one below the
other
into a /single/ window by using
Thanks a lot Gabor, now I could finally plot the as time data. I just have
one more question, and I hope it is the last.
In the script of the boxplot,
bp - boxplot(as.numeric(skiers$start), yaxt = n)
axis(2, bp$stats, times(bp$stats), las = 2, cex.axis = 0.5)
I have been trying to add a main
On Sat, 5 Dec 2009, Juliet Hannah wrote:
Your R code looks correct.
There are a couple of hiccups.
First the degrees of freedom for the partial correlation would be wrong
even if there was no missing data.
Because this is a straightforward calculation, I would be surprised if there
were
you might look at partial.r in the psych package
dadrivr wrote:
I'm trying to write code to calculate partial correlations (along with
p-values). I'm new to R, and I don't know how to do this. I have
searched and come across different functions, but I haven't been able to
get any of
Hello,
on Mon Nov 9 17:57:04 CET 2009 I've sent
an e-mail to the R mailing list (see below),
about a failing regression test. Yet nobody
replied, while (obviously) the situation didn't
change (installation still fails, and might
continue to do so in the future).
I wonder whether somebody has to
The question lacks so many specifics that would be needed to address
problem that I suspect persons with sufficient knowledge to address it
(and I am probably not among that group) simply passed it over and
waited for you to get sufficiently motivated to actually read the
Posting Guide.
If the package passes the checks (R CMD check) on your macine, it should
be fine. Some compiler warnings are expected.
Best wishes,
Uwe Ligges
NCS wrote:
I installed RF on Linux OpenSuSe 11.1 and while it did install and did run a model I had
created on Windows correctly, it gave me a lot
Tom La Bone wrote:
I have a measurement of 8165.666 and an uncertainty of 338.9741 (the units of
both are unimportant). I can easily round the uncertainty to two significant
digits with signif(338.9741,2), which gives 340. Is there a function in R
that will take 8165.666 and round it to be
Ning Ma wrote:
Hi everyone. How can I draw a big heatmaps?
png(foo.png,1,1)
heatmap(x)
dev.off()
where x is a big matrix, say 200*200.
The code above generates a small heatmap in the middle of the png file
and leaves big margins. I expect it to take up more space so that the
labels
PtitBleu wrote:
Hello,
I have a friday problem.
I'm trying to plot the number of measures by day with this command between
the 2008-07-31 and the 2009-11-13 (it works) :
plot(unique(as.Date(strptime(data$date, format=%Y-%m-%d %H:%M:%S))),
measuresbyday)
then I would like to plot vertical
Hello everyone.
After some good time of work, I am proud to present: www.r-bloggers.com
What is R-Bloggers.com?
R-Bloggers.com hopes to serve the R community by presenting (in one place)
all the new articles (posts) written (in English) about R in the R
blogosphere.
How does R-Bloggers operate?
On 5 December 2009 at 21:38, Tal Galili wrote:
| R-Bloggers.com hopes to serve the R community by presenting (in one place)
| all the new articles (posts) written (in English) about R in the R
| blogosphere.
But how is that different from
http://PlanetR.stderr.org
which has
Use the title function:
title(My main, xlab = My X, ylab = My Y)
On Sat, Dec 5, 2009 at 12:38 PM, uvilla maruchave...@hotmail.com wrote:
Thanks a lot Gabor, now I could finally plot the as time data. I just have
one more question, and I hope it is the last.
In the script of the boxplot,
Hi Dirk,
I wish to emphasis that I came across PlanetR over a year ago,
but completely forgot it existed when working on R-bloggers. Also, when I
contacted the bloggers about this idea, non of them actually wrote to me
about it (which makes me feel better about not remembering it). I apologies
if
-Original Message-
From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org]
On Behalf Of Tal Galili
Sent: Saturday, December 05, 2009 11:38 AM
To: r-help@r-project.org
Subject: [R] Announcing a new R news site: R-bloggers.com
Hello everyone.
After some good time
Hi Daniel.
In short: no.
In more words:
1) I have zone alarm also on my computer and it gives me no warnings.
2) The only two external scripts the site has are of woopra and google
analytics, both are known external statistics services.
3) It could be (although not likely) that the site is
Uwe Ligges-3 wrote:
Tom La Bone wrote:
I have a measurement of 8165.666 and an uncertainty of 338.9741 (the
units of
both are unimportant). I can easily round the uncertainty to two
significant
digits with signif(338.9741,2), which gives 340. Is there a function in R
that will take
Hi Everyone,
I have two very basic questions and would appreciate your help.
1. I would like to see/access the data that comes with a given R package by
using a function like read.table(). For example, I just installed car
package from CRAN. I know that somewhere within the package, there is
On 12/05/2009 09:32 PM, Tal Galili wrote:
Hi Dirk,
I wish to emphasis that I came across PlanetR over a year ago,
but completely forgot it existed when working on R-bloggers. Also, when I
contacted the bloggers about this idea, non of them actually wrote to me
about it (which makes me feel
I am trying to fit a linear model with seasonal effects but keep getting
'Incorrect number of dimensions'. I have no idea what this means or how to
fix it. I am following instructions received from an instructor and it
worked for him, so I assume it has something to do with my data. Here is my
Hi list,
does anybody know a easy to understand example in R which shows how to
perfom an ANCOVA?
I already tried to understand the example which you get when you type ?aov,
but I did not really
understand the output.
Best,
syrvn
--
View this message in context:
Hello,
I have some trouble in terms of using integrate function in R.
f1 is a function of p and x where x is supposed to be a vector. (See the
code).
Then I want to write function f2 which is a function of the vector
x after I integrate out p.
Can some one give me some help? Many thanks!
On Dec 5, 2009, at 4:59 PM, li li wrote:
Hello,
I have some trouble in terms of using integrate function in R.
f1 is a function of p and x where x is supposed to be a vector. (See
the
code).
Then I want to write function f2 which is a function of the vector
x after I integrate out p.
I donât have comments as yet, because I didnât stay around the site too
long. I will go back and look at it using a spare Ubuntu box and let you know
what I think.
Dan
Daniel Nordlund
Bothell, WA USA
_
From: Tal Galili [mailto:tal.gal...@gmail.com]
Sent: Saturday,
Hi Romain,
First - I'd like to say that you where one of the bloggers I wanted to
e-mail and didn't get to it. I still remember our short session in useR 2009
where you showed me your plans for an R editor - I am still waiting to see
it once it comes out.
Regarding the rest of what you wrote,
i have three data, x coordinate, y coordinate and signal strength
i use tapply() function to get the average ss in the give x,y location
x=c(1,2,3,1)
y=c(1,2,3,1)
ss=c(55,NA,55,88)
ss_byxy_test=tapply( ss, list( x, y), mean)
and I get this table
1 2 3
1 71.5 NA NA
2 NA NA NA
3
Tariq Perwez wrote:
Hi Everyone,
I have two very basic questions and would appreciate your help.
1. I would like to see/access the data that comes with a given R package
by
using a function like read.table(). For example, I just installed car
package from CRAN. I know that somewhere
Hi All,
I want to produce a similar Forest Plot as it is on the following link,
but my data would be having only two columns (one for Estimate and other
for Std. Dev). Can anyone suggest some function() {Package} which can take
such file as an input and give following forest plot:
The figure that you linked to was produced with the metafor package. It can
also be used to produce a forest plot if you have means and corresponding
standard errors of the means. The standard error of a mean is equal to SD /
sqrt(n), so as long as you also know the sample sizes (n), you can
Thanks for your reply. Which function I should explore in metafor package
for this kind of plot.
Also I have to do a forest plot for regressions estimates (betas) and
corresponding sqrt(var). I hope in this case there is no difference
between std. error and std. deviation? So, a 95% confidence
Thank you very much for your reply!
It is not an assignment.
What I want to do is what we often do. If we have a bivariate function of x
and p,
I first fix x and integrate out p. Then the resultant function is only in
terms of x.
Here f1 is a bivariate function of x and p.
f1 - function (p,x)
Dear Professor Frank Guess,
Why did you call me a Curious George?
What is a curious george as in American context?
Why did you address this email only to Laura and me.
Why did you not answer my early query on what is a curious George?
Why do you also send me emails saying I and Gandhi are
Hi,
I'm plotting grouped barplot using following code and data. I need help with
re-ordering the labels.
1. On x-axis the factor AGE is grouped in order 0--4, 15--18, 5--14;
whereas I would like to have it in 0--4, 5--14, 15--18.
2. If I need to re-order RACE variable. How can I do it assuming
Hi R Users,
Is there a equivalent command in R where I can read in raw data? For example
I'm looking for equivalent R code for following SAS code:
DATA survey;
INPUT id sex $ age inc r1 r2 r3 ;
DATALINES;
1 F 35 17 7 2 2
17 M 50 14 5 5 3
33 F 45 6 7 2 7
49 M 24 14 7 5 7
65 F
Dear Gary,
Here is a suggestion using read.table() and textConnection():
toread - id sex age inc r1 r2 r3
1 F 35 17 7 2 2
17 M 50 14 5 5 3
33 F 45 6 7 2 7
49 M 24 14 7 5 7
65 F 52 9 4 7 7
81 M 44 11 7 7 7
2 F 34 17 6 5 3
18 M 40 14 7 5 2
34 F 47 6 6 5 6
50 M 35
Here is how you can do it:
f1 - function (p,x) {
sapply(p, function(p) prod( p*x+(1-p)*x^2) ) # the function should be
vectorized for `integrate'
}
f2 - function(x) {
integrate(f1, 0, 1, x)$val # you need to only return the `value' of integration
}
f2(x=1:3)
Hope this helps,
Ravi.
Thank you all very much!
Yes, f2 is the function I wanted to write. I tried to do use Vectorize
function to f1, it did not work.
f2 - function(x)
+ {
+ integrate(Vectorize(f1,vectorize.args =p), lower=0,upper=1, x)
+ }
f2(c(2,3))
Error in Vectorize(f1, vectorize.args = p) :
I did get it to work with Vectorize. My problem was that I don't
know if the answer made sense because I could not tell what
mathematical underpinnings were being studied.
--
David.
On Dec 5, 2009, at 10:05 PM, li li wrote:
Thank you all very much!
Yes, f2 is the function I wanted to
I'm running an LSODA to generate some graphs, but I need to stop at a certain
point and use those values to generate another LSODA output. This is
working fine, but when I try to run the second LSODA, I get the Error in
eval(expr, envir, enclos) : object 'N' not found. Any ideas what can be
I'm running an LSODA to generate some graphs, but I need to stop at a certain
point and use those values to generate another LSODA output. This is
working fine, but when I try to run the second LSODA, I get the Error in
eval(expr, envir, enclos) : object 'N' not found. Any ideas what can be
li li-13 wrote:
Yes, f2 is the function I wanted to write. I tried to do use Vectorize
function to f1, it did not work.
f2 - function(x)
+ {
+ integrate(Vectorize(f1,vectorize.args =p), lower=0,upper=1, x)
+ }
f2(c(2,3))
Error in Vectorize(f1, vectorize.args = p) :
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