Re: [R] Applying function with separate dataframe (calibration file) supplying some inputs

2011-10-20 Thread Nathan Miller
Thanks Josh, I appreciate your comments. Merge is quite easy and I guess I should just go that route. I don't have so many data points so the speed isn't really much of an issue. I was just curious whether there was anything more elegant. Yes, the function is not clear or ideal for

Re: [R] Levenshtein-Distance

2011-10-20 Thread steven mosher
check the help archives. hclust with method=ward might be what you are looking for On Wed, Oct 19, 2011 at 2:43 PM, Jörg Reuter jo...@reuter.at wrote: I am very new to R, so sorry that I ask stupid things. I want compare a Matrix row by row and at the end I want to a Matrix with the

Re: [R] Levenshtein-Distance

2011-10-20 Thread Jörg Reuter
My big problem is not ward, it is to calculate the Levenshtein-Distance. check the help archives.  hclust  with method=ward  might be what you are looking for On Wed, Oct 19, 2011 at 2:43 PM, Jörg Reuter jo...@reuter.at wrote: I am very new to R, so sorry that I ask stupid things. I want

[R] How to remove all objects except the sequence

2011-10-20 Thread Sergio René Araujo Enciso
Dear All: I would like to know if there is plausible way to say to R to remove all elements in the memory but the sequence. I have a code which makes a loop, and what I want is after the programme has performed all the operation over every ith element, to remove all the objects, expect the

Re: [R] How to remove all objects except the sequence

2011-10-20 Thread Eik Vettorazzi
Hi Sergio, how about this: rm(list=setdiff(ls(),z)) cheers. Am 20.10.2011 11:00, schrieb Sergio René Araujo Enciso: Dear All: I would like to know if there is plausible way to say to R to remove all elements in the memory but the sequence. I have a code which makes a loop, and what I want

Re: [R] How to call a function defined within another function

2011-10-20 Thread Uwe Ligges
On 19.10.2011 22:08, Sébastien Bihorel wrote: Dear R-users, I would need some advices on the proper way to call a particular function. This function is called scope.char and it is embedded in the step.gam function from the gam package. I am trying to call scope.char directly in a script but I

Re: [R] Vegan: Anova.CCA accessing original data using option by=

2011-10-20 Thread Jari Oksanen
Steve Pawson Steve.Pawson at scionresearch.com writes: My apologies for the delay in responding to your request for further information I have been travelling for work since you replied and have only just returned to email contact. The output from the traceback is as follows # This is the

[R] Are they fully identical: WinBUGS and OpenBUGS; R2WinBUGS and R2OpenBUGS

2011-10-20 Thread Petar Milin
Hello ALL! I am running Linux, Fedora 15 64-bits, and R on it. I need to use WinBUGS and R2WinBUGS, but as far as I read, WinBUGS is closed project, to be continued with/as OpenBUGS. Thus, I have found R2OpenBUGS on OpenBUGS Contributed Code (http://openbugs.info/w/UserContributedCode), not on

Re: [R] Cairo creates italized plots?

2011-10-20 Thread Albin Blaschka
Am 19.10.2011 17:33, schrieb Fong Chun Chan: Hi, Has anyone else run into this weird behaviour where the text in the plots created using Cairo are always italicized. For example, library(Cairo) Cairo(file='cairo_created', type='pdf', dpi=100) plot(1:10) dev.off() This produces the

[R] quantmod package

2011-10-20 Thread ATANU
i am new to the quantmod package . so if the answer is trivial please excuse me. i want to study stock values within a day. i get current stock updates using getQuotes and then want to produce usual quantmod graphs with that values. also the graph should be able of adding technical indicators.

[R] How to change font family in a levelplot using Lattice

2011-10-20 Thread Bingzhang Chen
Dear R users: I want to assign a global font family to a levelplot such as par(family=serif) in traditional plotting. However, I can only change part of the text using panel.text(x,y,A,fontfamily=serif) or scales=list(fontfamily=serif) to change the axis number font family. How can I change

Re: [R] Levenshtein-Distance

2011-10-20 Thread Mark Difford
On Oct 20, 2011; 10:07am Jörg Reuter wrote: I want compare a Matrix row by row and at the end I want to a Matrix with the Levenshtein-Distance. Jörg, To begin with, try the following at the command prompt: ## RSiteSearch(Levenshtein) Shows, amongst other hits, that package vwr has a

[R] rose.diag in CircStats package

2011-10-20 Thread richard hewitt
Dear R community, I tried to post a query about the use of the rose.diag function from the CircStats package to the r-help forum a few days ago. It gave all appearances of having been successful. It would have been my first post; I am correctly recieving all the R-help emails, but  but the

[R] Creating affybatch objects from matrix (data from qPCR array)

2011-10-20 Thread ali_protocol
Hi! Is There a way to manually create an affybatch object from qPCR array data? -- View this message in context: http://r.789695.n4.nabble.com/Creating-affybatch-objects-from-matrix-data-from-qPCR-array-tp3921559p3921559.html Sent from the R help mailing list archive at Nabble.com.

Re: [R] Levenshtein-Distance

2011-10-20 Thread Jörg Reuter
Yes, I see many package. But the Problem is, the Package compare strings. But there is a diffrent between the caracter 1 and 2 and the number 12. All package I see compare every letter, but a number have many digits but the digits make only sense if the function see them together. I tough to

Re: [R] Creating affybatch objects from matrix (data from qPCR array)

2011-10-20 Thread Martin Morgan
On 10/20/2011 04:14 AM, ali_protocol wrote: Hi! Is There a way to manually create an affybatch object from qPCR array data? Hi -- affybatch is for Affy probe information only; perhaps you mean an ExpressionSet and the Bioconductor mailing list

[R] defining independent predictors in haplo.stats

2011-10-20 Thread niki
Hi all, I am doing analyses with haplo.stats in R. I know that when doing analysis with haplo.glm, I have to define my outcome variable, i.e. if it is binomial or gaussian. When looking at interactions , eg. gender * geno or life events * geno do I have to specify whether the independent factor

Re: [R] locating minimum value in matrix

2011-10-20 Thread ISMA11
Hi, I was looking for a solution to the same problem. I just found something and thought it might be useful to share. Suppose you look for the positions of the minimum value in matrix D. Using a little euclide division solves the problem easily. Here is my code. min(D) Dv=as.vector(D)

[R] How to remove multiple outliers

2011-10-20 Thread aajit75
Hi All, I am working on the dataset in which some of the variables have more than one observations with outliers . I am using below mentioned sample script library(outliers) x1 - c(10, 10, 11, 12, 13, 14, 14, 10, 11, 13, 12, 13, 10, 19, 18, 17, 10099, 10099, 10098) outlier_tf1 =

[R] Structural equation modelling in R compared with Amos

2011-10-20 Thread Ravi Kulkarni
Can anyone give me links to reviews/comparisons of R with Amos for SEM? I have found some but they are a little old (2009). Ravi -- View this message in context: http://r.789695.n4.nabble.com/Structural-equation-modelling-in-R-compared-with-Amos-tp3921654p3921654.html Sent from the R help

Re: [R] How to call a function defined within another function

2011-10-20 Thread Sébastien Bihorel
Thanks Uwe for reply. The license is actually a problem: my package is distributed with a LGPL3 license, which is incompatible with GPL-2. I'll try to find a work-around. Sebastien 2011/10/20 Uwe Ligges lig...@statistik.tu-dortmund.de On 19.10.2011 22:08, Sébastien Bihorel wrote: Dear

Re: [R] How to call a function defined within another function

2011-10-20 Thread Gabor Grothendieck
On Wed, Oct 19, 2011 at 4:08 PM, Sébastien Bihorel pomc...@free.fr wrote: Dear R-users, I would need some advices on the proper way to call a particular function. This function is called scope.char and it is embedded in the step.gam function from the gam package. I am trying to call

Re: [R] How to remove all objects except the sequence

2011-10-20 Thread Araujo . Enciso
Thanks a lot for the answer, it works and really improves the speed of the loop. Best, Sergio René El , Eik Vettorazzi e.vettora...@uke.de escribió: Hi Sergio, how about this: rm(list=setdiff(ls(),z)) cheers. Am 20.10.2011 11:00, schrieb Sergio René Araujo Enciso: Dear All:

Re: [R] Structural equation modelling in R compared with Amos

2011-10-20 Thread Joshua Wiley
Hi Ravi, Look at openmx, it uses R to do matrix optimization especially for SEM (though more general too). It does not have the draw paths interactively feature, but it is extremely powerful and flexible. I have used Amos, EQS, Mplus, Lisrel, and OpenMx and I believe OpenMx is competitive

Re: [R] need help on read.spss

2011-10-20 Thread Georgie
I see, I struggle too with SPSS. But I use this company for help: http://www.ivoryresearch.com/custom-statistical-services-spss.php they are really helpful -- View this message in context: http://r.789695.n4.nabble.com/need-help-on-read-spss-tp3893430p3921825.html Sent from the R help mailing

[R] Constructing the transition pair using loop function and paste()

2011-10-20 Thread Sally Zhen
Hi all, I'd like to thank those who helped me with my previous loop function question with agents/events. I have solved the problem with the advice from this community. I have now moved on to the next step, which requires me to find all the transition pair within an event. A sample data and the

Re: [R] Levenshtein-Distance

2011-10-20 Thread R. Michael Weylandt
Have you considered simply changing your numbers into strings with as.character()? E.g., library(vwr) levenshtein.distance(aba,cda) num1 - 121; num2 - 341 levenshtein.distance(as.character(num1),as.character(num2)) I find that last line a little verbose to type, so I'd write a little helper

Re: [R] Constructing the transition pair using loop function and paste()

2011-10-20 Thread jim holtman
try this: You were redfining 'transition' within the loop x -

Re: [R] Constructing the transition pair using loop function and paste()

2011-10-20 Thread jim holtman
Here is another way of getting the lists newtrans - lapply(split(mydata, mydata$agents), function(.agent){ + .all - paste(.agent$actions, collapse = '') + .indx - embed(seq(nchar(.all)), 2) + substring(.all, .indx[, 2], .indx[, 1]) + }) newtrans $`2857` [1] LB $`293` [1] AD DF FH

Re: [R] How to call a function defined within another function

2011-10-20 Thread Sébastien Bihorel
Thanks for the hack Gabor! That works just fine... (I guess until the step.gam function is re-structured :D) On Thu, Oct 20, 2011 at 9:20 AM, Gabor Grothendieck ggrothendi...@gmail.com wrote: On Wed, Oct 19, 2011 at 4:08 PM, Sébastien Bihorel pomc...@free.fr wrote: Dear R-users, I would

Re: [R] How to remove multiple outliers

2011-10-20 Thread R. Michael Weylandt
Did you read the documentation for ?outlier. It clearly states that it removes the single (possibly repeated) value with the largest distance from the mean. That's only 10099 hereyou could perhaps apply the function more than once or write your own outlier removal script using whatever

Re: [R] Levenshtein-Distance

2011-10-20 Thread David Winsemius
On Oct 20, 2011, at 7:53 AM, Jörg Reuter wrote: Yes, I see many package. But the Problem is, the Package compare strings. But there is a diffrent between the caracter 1 and 2 and the number 12. All package I see compare every letter, but a number have many digits but the digits make only

[R] effect function in the effects package

2011-10-20 Thread Xu Jun
Dear r-help listers, I am using effects to produce an effect plot after the proportional odds logistic regression model. There is no problem for me to estimate the model, but when it comes to the graphing, I was stuck. see the codes below:

Re: [R] Constructing the transition pair using loop function and paste()

2011-10-20 Thread Sally Zhen
I got it! Thank you so much Jim! On 20 October 2011 15:06, jim holtman jholt...@gmail.com wrote: try this: You were redfining 'transition' within the loop x -

Re: [R] help with glmmADMB ZI; function maximizer failed

2011-10-20 Thread emmarosenfeld
bbolker wrote: emmarosenfeld emmarosenfeld at hotmail.co.uk writes: Dear all, I am having some problems trying to run a GLMM model with zero-inflation using the alpha version of glmmADMB (0.6.4) using R (2.13.1) in Windows and I would greatly appreciate some help. My count

Re: [R] Structural equation modelling in R compared with Amos

2011-10-20 Thread Dénes TÓTH
Dear Ravi, I would also suggest you to have a look at 'lavaan' (www.lavaan.org). It has an extremely straightforward yet flexible model syntax and very good documentation. Although its statistical capabilities are not comparable to those of Mplus (which is the most powerful SEM-software I

Re: [R] rose.diag in CircStats package

2011-10-20 Thread David Winsemius
On Oct 20, 2011, at 6:35 AM, richard hewitt wrote: Dear R community, I tried to post a query about the use of the rose.diag function from the CircStats package to the r-help forum a few days ago. It gave all appearances of having been successful. It would have been my first post; I am

Re: [R] Strange R behavior for product of two sum of integers

2011-10-20 Thread David Winsemius
On Oct 20, 2011, at 1:45 AM, Lei Jiang wrote: When using power operator ^, both the base and index are coerced to type real. The range of real is larger than integer. However, an ordinary multiplication operator * offers it to two integers (as always). So, to avoid the warning, just add

Re: [R] need help on read.spss

2011-10-20 Thread Paul Bivand
Try the memisc package which seems to have an independent implementation from PSPP (at least looks that way when compiling on linux) plus the ability to select variables before reading in the entire dataset. Paul Bivand - Paul Bivand Head of

Re: [R] Strange R behavior for product of two sum of integers

2011-10-20 Thread Thomas Lumley
On Thu, Oct 20, 2011 at 7:50 AM, David Winsemius dwinsem...@comcast.net wrote: On Oct 20, 2011, at 1:45 AM, Lei Jiang wrote: When using power operator ^, both the base and index are coerced to type real. The range of real is larger than integer. However, an ordinary multiplication operator

Re: [R] Strange R behavior for product of two sum of integers

2011-10-20 Thread peter dalgaard
On Oct 20, 2011, at 16:50 , David Winsemius wrote: That does seem to be an infelicity that ought to be fixed. Using the infix addition operator does that same sort of coercions, so why would one expect the infix multiplication operator to refuse to do it?

Re: [R] effect function in the effects package

2011-10-20 Thread John Fox
Dear Xu Jun, I'm not sure whether this is the source of the error, but it may help to spell the xlevels argument correctly (it is not xlevles). I hope this helps, John John Fox Sen. William McMaster Prof. of Social Statistics Department of

Re: [R] Structural equation modelling in R compared with Amos

2011-10-20 Thread Joshua Wiley
Lavaan is a nice package too, thanks for mentioning it. Given sufficient understanding of matrices, I think OpenMx is arguably as or more powerful than Mplus---it runs circles around Mplus in terms of flexibility, although Mplus does what it does well, with (IMO) fairly sensible defaults, and

[R] bar plot issues

2011-10-20 Thread Henri-Paul Indiogine
Hi! I have 2 problems in drawing a stacked bar plot: (1) This is a stacked bar plot with more than 100 bars next to each other. So there should not be names at the bottom of the bars because the bars are too narrow.I tried arg.names=NULL but that does not work because R uses the row names

Re: [R] bar plot issues

2011-10-20 Thread Uwe Ligges
On 20.10.2011 18:03, Henri-Paul Indiogine wrote: Hi! I have 2 problems in drawing a stacked bar plot: (1) This is a stacked bar plot with more than 100 bars next to each other. So there should not be names at the bottom of the bars because the bars are too narrow.I tried arg.names=NULL

Re: [R] heritability estimation

2011-10-20 Thread Peter Claussen
Moohbear, I may be able to help, in that I've had some graduate course work in plant breeding and some experience with R. However, I can't tell for certain with the information provided. What papers that use SAS or SPSS are you citing? The question I would ask, in order to determine if I

[R] Matrix Approx

2011-10-20 Thread onewastedlife
Need help with finding out approx over each row of a matrix. Here is the setup: years - matrix(c(1,2,3,1,2,3),nrow=2, ncol=3,byrow=TRUE) rates - matrix(c(1,2,3,11,12,13), nrow = 2, ncol=3, byrow=TRUE) points - matrix(c(1.5, 1.5), nrow=2, ncol=1, byrow=TRUE) so basically i have above three

[R] StatET Sweave cannot compile pdf files

2011-10-20 Thread Egor Ananev
I am new to R, Sweave, and LaTeX. I am running StatET with Eclipse 3.7 on a Windows 7 x64 OS. StatET also includes the Sweave add-on, which I use to try and compile a PDF document. I also installed MiKTeX 2.9, because, previously, R could not execute texi2dvi (presumably, because there was no TeX

Re: [R] Strange R behavior for product of two sum of integers

2011-10-20 Thread Lei Jiang
On Thu, Oct 20, 2011 at 10:37 AM, peter dalgaard pda...@gmail.com wrote: On Oct 20, 2011, at 16:50 , David Winsemius wrote: That does seem to be an infelicity that ought to be fixed. Using the infix addition operator does that same sort of coercions, so why would one expect the infix

Re: [R] bar plot issues

2011-10-20 Thread Henri-Paul Indiogine
Hi Uwe! Thanks for the feedback. However, now the graph does not draw the y-axis nor labels and gives the following error message: Error in barplot.default(t(file.codes), beside = FALSE, names.arg = NA, : incorrect number of names This is the R code now: barplot(t(file.codes), beside =

[R] Running R with browser without installing anything

2011-10-20 Thread Bogaso Christofer
Dear all, the company I work for has Matlab installed for statistical/mathematical calculations and really not ready to go with R (even installing exe file for R). Therefore I was wondering is it possible to do analysis R using browser like IE, without installing anything? Thanks for your

Re: [R] bar plot issues

2011-10-20 Thread Uwe Ligges
On 20.10.2011 18:58, Henri-Paul Indiogine wrote: Hi Uwe! Thanks for the feedback. However, now the graph does not draw the y-axis nor labels and gives the following error message: Error in barplot.default(t(file.codes), beside = FALSE, names.arg = NA, : incorrect number of names

[R] How to cancel a R function in the command line?

2011-10-20 Thread Rui Esteves
Hi, This question seems very basic but I cannot find an answer on google. I have a R session on a linux command line. I called a function that is taking ages. I want to cancel the function but without killing the R session. What is the shortcut? Thanks, Rui [[alternative HTML version

Re: [R] How to cancel a R function in the command line?

2011-10-20 Thread Tsjerk Wassenaar
Hi Rui, In the R terminal ctrl-c cancels the function, not the session. Cheers, Tsjerk On Oct 20, 2011 7:16 PM, Rui Esteves ruimax...@gmail.com wrote: Hi, This question seems very basic but I cannot find an answer on google. I have a R session on a linux command line. I called a function

Re: [R] How to cancel a R function in the command line?

2011-10-20 Thread Rui Esteves
Hi Tsjerk, In my command line it does not. Maybe it because I am using linux. That is my problem. Thank you for answering, Rui On Thu, Oct 20, 2011 at 7:18 PM, Tsjerk Wassenaar tsje...@gmail.com wrote: Hi Rui, In the R terminal ctrl-c cancels the function, not the session. Cheers,

Re: [R] How to cancel a R function in the command line?

2011-10-20 Thread Rui Esteves
I found it. It is ctr shift c Rui On Thu, Oct 20, 2011 at 7:22 PM, Rui Esteves ruimax...@gmail.com wrote: Hi Tsjerk, In my command line it does not. Maybe it because I am using linux. That is my problem. Thank you for answering, Rui On Thu, Oct 20, 2011 at 7:18 PM, Tsjerk Wassenaar

Re: [R] effect function in the effects package

2011-10-20 Thread Xu Jun
Dear Professor Fox, Thanks a lot! That is an embarrassing error. After I cleaned up and simplified my codes, and ran the following two lines: myologit - polr(factor(warm) ~ yr89 + male + white + age + ed + prst, + data=ordwarm2, method=c(logistic)) plot(effect(age, myologit,

Re: [R] How to cancel a R function in the command line?

2011-10-20 Thread Uwe Ligges
On 20.10.2011 19:22, Rui Esteves wrote: Hi Tsjerk, In my command line it does not. Perhaps you arfe using a function that calls compiled code that does not look for user interrupts? try it on repeat{1+1} ... Uwe Ligges Maybe it because I am using linux. That is my problem. Thank

[R] Group based trajectory modeling in R? Is there a way?

2011-10-20 Thread Chris Conner
I have been searching the web for an answer on whether there is a package for group-based trajectory modeling in R.  Something along the lines of what PROC TRAJ (http://www.andrew.cmu.edu/user/bjones/index.htm) accomplishes in SAS.  Does anyone have any experience working with a package that

Re: [R] bar plot issues

2011-10-20 Thread Henri-Paul Indiogine
Hi Uwe! 2011/10/20 Uwe Ligges lig...@statistik.tu-dortmund.de:  names.arg = rep(NA, nrow(file.codes)) Yes, that works beautifully. Danke schoen! Henri-Paul -- Henri-Paul Indiogine Curriculum Instruction Texas AM University TutorFind Learning Centre Email: hindiog...@gmail.com Skype:

[R] Survival analysis

2011-10-20 Thread Cem Girit
Hello, I need some results from the survival analysis of my data that I do not know whether exist in Survival Package or how to obtain if they do: 1. The Mean survival time 2. The standard error of the mean 3. Point and 95% Lower Upper Confidence

Re: [R] effect function in the effects package

2011-10-20 Thread Xu Jun
Dear Professor Fox, I didn't include codes in between these two commands (polr and plot(effect()). I am still trying to work it out. Maybe it's related to how I coded some of the factor variables as I got some successful runs after I changed the coding for some factor variables. I will keep

Re: [R] Running R with browser without installing anything

2011-10-20 Thread jim holtman
It runs fine off a flash drive. On Thu, Oct 20, 2011 at 1:29 PM, Bogaso Christofer bogaso.christo...@gmail.com wrote: Dear all, the company I work for has Matlab installed for statistical/mathematical calculations and really not ready to go with R (even installing exe file for R). Therefore I

[R] p-val issue for ranked two-group test

2011-10-20 Thread Laurel Klein Serieys
Hi- I'm wondering if anyone can help me with my code. I'm coming up dry when I try to get a p-value from the following code. If I make a histogram of my resampled distribution, I find the difference between by groups to be significant. I've ranked the data since I have outliers in one

[R] Randomized Points in space/ saving model results

2011-10-20 Thread magono
A bit new to R and I'm working on something a bit more challenging than I am used to- so here's whats going on: Data inputs: 9 different shapefiles (.shp) of different point locations (lat, long) shapefile bounding box (lat/long corner points (14, 1) (15,1) (14, 2) (15,2))

Re: [R] Survival analysis

2011-10-20 Thread Sarah Goslee
Hi, On Thu, Oct 20, 2011 at 2:04 PM, Cem Girit gi...@biopticon.com wrote: Hello,                I need some results from the survival analysis of my data that I do not know whether exist in Survival Package or how to obtain if they do: 1.       The Mean survival time 2.       The

Re: [R] effect function in the effects package

2011-10-20 Thread John Fox
Dear Xu Jun, It's really not possible for me to know the source of the error without a complete, reproducible example, but if I had to guess, I'd guess that there's a scoping problem of some sort, with the value of yr89 coming from somewhere that you don't expect. How about fitting the

[R] identifying groups in xyplot

2011-10-20 Thread wisc_maier
There have been posts in the past regarding similar questions, but many of them looked dated. I am using xyplot to show variability within my replicates, and so far so good, but I would like to refine the plot. I've used the code below to graph my response variable against year (coded as a factor

Re: [R] effect function in the effects package

2011-10-20 Thread Xu Jun
Dear Professor Fox, Now I got it. It all comes from my unfamiliarity with the effect function. I forgot the c part in the given.values option, plus it looks like plot(effect()) does not like factor(warm) in the polr function. So here are the two working lines: ordwarm2$warm2 -

Re: [R] effect function in the effects package

2011-10-20 Thread John Fox
Dear Xu Jun, On Thu, 20 Oct 2011 14:41:30 -0400 Xu Jun junx...@gmail.com wrote: Dear Professor Fox, Now I got it. It all comes from my unfamiliarity with the effect function. I forgot the c part in the given.values option, plus it looks like plot(effect()) does not like factor(warm) in the

Re: [R] Are they fully identical: WinBUGS and OpenBUGS; R2WinBUGS and R2OpenBUGS

2011-10-20 Thread Ben Bolker
Petar Milin pmilin at ff.uns.ac.rs writes: Hello ALL! I am running Linux, Fedora 15 64-bits, and R on it. I need to use WinBUGS and R2WinBUGS, but as far as I read, WinBUGS is closed project, to be continued with/as OpenBUGS. Thus, I have found R2OpenBUGS on OpenBUGS Contributed Code

[R] Aggregating data help

2011-10-20 Thread James Holland
Hello, I have a dataset with student performance on a math test. There are multiple cases for each student (identified by id) and the concept as a variable. rtest id test subject gradeconcept correct tested per_corr year 11 83 Mathema 8 8.2.D 1

Re: [R] effect function in the effects package

2011-10-20 Thread Xu Jun
Dear Prof. Fox, I just picked up R not long ago, and apologize that I am not that familiar with some basics. I am trying to replicate what I can do with Stata in R. Thanks for all your help! On Thu, Oct 20, 2011 at 2:47 PM, John Fox j...@mcmaster.ca wrote: Dear Xu Jun, On Thu, 20 Oct 2011

Re: [R] Running R with browser without installing anything

2011-10-20 Thread Ken
Try Googling R Portable Ken Hutchison On Oct 20, 2554 BE, at 2:13 PM, jim holtman jholt...@gmail.com wrote: It runs fine off a flash drive. On Thu, Oct 20, 2011 at 1:29 PM, Bogaso Christofer bogaso.christo...@gmail.com wrote: Dear all, the company I work for has Matlab installed for

Re: [R] Scatterplot with the 3rd dimension = color?

2011-10-20 Thread Kerry
Can someone please help me out with this? The ggplot2 suggestion works great but I've spent a few days trying to figure out how to plot 2 variables with it and I'm stuck. Here's my example code: library(ggplot2) #Here's the 1st plot x-rnorm(100) y-rnorm(100) z-rnorm(100) d - data.frame(x,y,z)

[R] R code Error : Hybrid Censored Weibull Distribution

2011-10-20 Thread ritwik_r
Dear Sir/madam, I'm getting a problem with a R-code which calculate Fisher Information Matrix for Hybrid Censored Weibull Distribution. My problem is that: when I take weibull(scale=1,shape=2) { i.e shape1} I got my desired result but when I take weibull(scale=1,shape=0.5) { i.e shape1} it gives

Re: [R] bar plot issues

2011-10-20 Thread Henri-Paul Indiogine
Hi Uwe! 2011/10/20 Uwe Ligges lig...@statistik.tu-dortmund.de: arrange it outside by, e.g. increasing the size of margins (see argument mar in ?par) and place a separate legend (see ?legend) into the margins (see xps argument in ?par). I could not find 'xps', do you mean 'xpd'? This is what

Re: [R] Running R with browser without installing anything

2011-10-20 Thread Liviu Andronic
On Thu, Oct 20, 2011 at 7:29 PM, Bogaso Christofer bogaso.christo...@gmail.com wrote: Dear all, the company I work for has Matlab installed for statistical/mathematical calculations and really not ready to go with R (even installing exe file for R). Therefore I was wondering is it possible to

[R] Apply approx() to an array and eventually a list of arrays

2011-10-20 Thread Folkes, Michael
Hello all, I'm struggling to grasp how I might use lapply() instead of looping to run approx() on a list consisting of multiple arrays - each of equal dimension. But simpler than that, I haven't been able to successfully apply approx() to an array, unless I loop through the third dimension and

Re: [R] quantmod package

2011-10-20 Thread R. Michael Weylandt
Generally getting intraday/real-time data requires some sort of (paid) source, but if you are willing to just strip free quotes off the internet non-stop, perhaps something like this: while(TRUE) { cat( file = FileName.txt, c(getQuote(YHOO), recursive = T), \n, append = T) } # You could get

Re: [R] Survival analysis

2011-10-20 Thread Sarah Goslee
Hi, Please send your information to the r-help list, not just to me, but do note that the list is plain-text only. But surely all you are looking for is: dt-c(37,41,40,38,38,37,44,45,48,43,48,46,54,60,32,45,55,62,42,62,62,62,47,42,59,43,60,60,51,43,50,51,47,42,47,51) mean(dt) [1] 48.16667

[R] apply with function

2011-10-20 Thread Jörg Reuter
(Iske - matrix(c(1, 1, 1, 2, 2, 2, 10, 1, 1, 5, 1,2,2,2,1,1,1,4,4,4,4,3,3,3,30,3,3,3,3,3,3,3,5,4,4,4,4,4,44,2,2,2,2,4,5,5,5,5,5,5,5,5,95,1,2), ncol = 5)) numtochar - function(Zahl){ text - rawToChar(as.raw(Iske[1,]))} (Iske.char[]-apply(Iske,1,numtochar)) I have a little problem with the command

Re: [R] apply with function

2011-10-20 Thread R. Michael Weylandt
Does this work? apply(Iske, 1, function(x) rawToChar(as.raw(x))) apply(Iske, 1, function(x) rawToChar(as.raw(x))) [1] \001\002\003\004\005 \001\002\003\004\005 \001\002\036\004\005 [4] \002\001\003\004\005 \002\001\003\004\005 \002\001\003,\005 [7] \n\004\003\002\005 \001\004\003\002\005

Re: [R] p-val issue for ranked two-group test

2011-10-20 Thread Joshua Wiley
Hi, It looks like you are trying to manually bootstrap. Take a look at: require(boot) ?boot as an added advantage of using boot instead of trying to do it manually, you can easily parallelize. In fact, if you are using one of the pre-release versions of 2.14.0, the new parallel package is

[R] Calculating differences

2011-10-20 Thread Jeffrey Joh
I have a table that looks like this: structure(list(speed = c(3,9,4,8,7,6), C = c(0.697, 0.011, 0.015, 0.012, 0.018, 0.019), house = c(1, 1, 1, 1, 1, 1), date = c(719, 1027, 1027, 1027, 1030, 1030), hour = c(18, 8, 8, 8, 11, 11), id = c(1000, 1, 10001, 10002, 10003, 10004)),

Re: [R] Randomized Points in space/ saving model results

2011-10-20 Thread R. Michael Weylandt
Not doing much work with spacial stats or shapefiles, I can't help in too much detail, but here are some R commands that might help for each part: a. # This will help you pick random points within your bounded box runif2d - function(n, xmin, xmax, ymin, ymax){ stopifnot(all(xmax xmin, ymax

Re: [R] Calculating differences

2011-10-20 Thread R. Michael Weylandt
I'd dont quite get what you are asking, but here's my best guess and you can tweak it go get what you need. I'd do it in two passes since you want two rather unrelated objects. structure(list(speed = c(3,9,4,8,7,6), C = c(0.697, 0.011, 0.015, 0.012, 0.018, 0.019), house = c(1, 1, 1, 1, 1, 1),

Re: [R] Survival analysis

2011-10-20 Thread David Winsemius
On Oct 20, 2011, at 5:05 PM, Sarah Goslee wrote: Hi, Please send your information to the r-help list, not just to me, but do note that the list is plain-text only. But surely all you are looking for is: dt- c

Re: [R] Randomized Points in space/ saving model results

2011-10-20 Thread Rolf Turner
On 21/10/11 06:32, magono wrote: A bit new to R and I'm working on something a bit more challenging than I am used to- so here's whats going on: Data inputs: 9 different shapefiles (.shp) of different point locations (lat, long) shapefile bounding box (lat/long corner

Re: [R] p-val issue for ranked two-group test

2011-10-20 Thread peter dalgaard
On Oct 20, 2011, at 23:48 , Joshua Wiley wrote: Hi, It looks like you are trying to manually bootstrap. Nope. It's a manually performed approximate Wilcoxon test. Which is fair enough if the object is to learn something. (Notice, however, that the ExactRankTests package eats this sort

Re: [R] identifying groups in xyplot

2011-10-20 Thread Weidong Gu
Hi, Just include pch=c(1,2,3), col=c('red','blue','yellow') or your choices in xyplot Weidong Gu On Thu, Oct 20, 2011 at 2:15 PM, wisc_maier cmai...@wisc.edu wrote: There have been posts in the past regarding similar questions, but many of them looked dated. I am using xyplot to show

Re: [R] Aggregating data help

2011-10-20 Thread Dennis Murphy
Hi: Here's a way using the reshape2 package. library('reshape2') rsub - subset(rtest, concept %in% c('8.2.D', '8.3.A', '8.3.B')) # want year ahead of concept in the variable list rsub - rsub[, c(1:4, 9, 5:8)] cast(rsub, id + test + subject + grade + year ~ concept, value_var = 'per_corr') #

[R] xyplot() or splom()?: two factors from same data frame

2011-10-20 Thread Rich Shepard
I'm not seeing how to plot the quantities associated with two values of a factor by reading the ?xyplot help page and Deepayan's book. Perhaps I need to generate many different subsets from the data frame, but that would require _many_ new data frames. The structure of the data frame (for a

Re: [R] Scatterplot with the 3rd dimension = color?

2011-10-20 Thread Dennis Murphy
AFAIK, you can't 'add' two ggplot2 graphs together; the problem in this case is that the two color scales would clash. If you're willing to discretize the z values, then you could pull it off. Here's an example: d - data.frame(x = rnorm(100), y = rnorm(100), z = factor(1 + (rnorm(100) 0))) d1 -

Re: [R] Foreach (doMC)

2011-10-20 Thread Jay Emerson
Jannis, I'm not complete sure I understand your first point, but maybe someone from REvolution will weigh in. Nobody is forcing anyone to purchase any products, and there are attractive alternatives such as the CRAN R and R Studio (to name two). This issue has arisen many times of the various

Re: [R] Calculating differences

2011-10-20 Thread Dennis Murphy
Hi: Here's one way with the plyr package. Using ds as the name of your data frame (thank you for the dput and clear description of what you wanted, BTW), library('plyr') ddply(ds, .(date), mutate, minspd = min(speed), Cmin = C[which.min(speed)], diff = C - Cmin) speed C house date hour

Re: [R] xyplot() or splom()?: two factors from same data frame

2011-10-20 Thread Duncan Mackay
Hi Rich Without a dataset I am not sure what you need. Further down the track you will need to plot what you finally need and this may help you decide what you need now for finals try library(lattice) library(latticeExtra) useOuterStrips( xyplot(variable1 + variable2 ~ Date|Site, data =

Re: [R] p-val issue for ranked two-group test

2011-10-20 Thread Joshua Wiley
On Thu, Oct 20, 2011 at 3:42 PM, peter dalgaard pda...@gmail.com wrote: On Oct 20, 2011, at 23:48 , Joshua Wiley wrote: Hi, It looks like you are trying to manually bootstrap. Nope. It's a manually performed approximate Wilcoxon test. Which is fair enough if the object is to learn

[R] stacked plot

2011-10-20 Thread Henri-Paul Indiogine
Hi! I am trying to use ggplot2 to create a stacked bar plot. Previously I tried using barplot() but gave up because of problems with the positioning of the legend and other appearance problems. I am now trying to learn ggplot2 and use it for all the plots that I need to create for my

[R] Change column/row-name

2011-10-20 Thread Jörg Reuter
Hi, I am very happy. My problems are solved without one little thing: (Iske - matrix(c(1, 1, 1, 2, 2, 2, 1, 1, 1, 5, 1, 2, 2, 2, 1, 1, 1, 4, 4, 4, 4, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 5, 4, 4, 4, 4, 4, 4, 2, 2, 2, 2, 4, 5, 5, 5, 5, 5, 5, 5, 5, 5, 1, 2), ncol = 5)) #My Matrix Iske- Iske+33 #I want

  1   2   >