e.net/')", NOT
install.packages('PKI',,'http://www.rforge.net/'), which, for some
inscrutable reason (runaway proxying ?) fails the same way as before.
A big Kudos and Thank You to Simon Urbanek, on behalf of not-so-stable
distributions users !
Emmanuel Charpentier
Dear list,
It seems that recent changes in openssl somehow broke the installation
or update of the PKI package. This is probably specific of my setup(s)
(Debian testing, updated frequently).
Copy of a mail to Simon Urbanek (PKI maintainer), sent 5 days ago
without reply nor acknowledgement
,
Emmanuel Charpentier
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cross-posting to r-help and r-debian-sig, but I think
that the issue is ... complicated and might not be as Debian-specific as
it seems at first view.
Sincerely,
Emmanuel Charpentier
Dear Max,
A few days ago, I started to have problems with odfWeave 0.7.17
, the discrepancies between Ubuntu 11.04 and Debian testing,
which are easier to explain : Debian has slightly more recent version).
I'll try to downgrade the R xml package (easier) and report results.
Again, thank you very much !
Emmanuel Charpentier
On Sat, 14
to 3.4.0 by the update.packages(ask=FALSE) I'm used to
do ...
Thank you again ! Now I can again use a multiprocessor eficiently to run
the same analyses on 18 datasets (thanks to mclapply (multicore)). A
serious win in my case...
Emmanuel Charpentier
Le samedi
warning that the Spiegelhalter gang put in front of the WinBUGS
manual still apply : MCMC sampling can be dangerous. To which I add
model checking, convergence assessment and validation might eat more
time than modeling itself.
HTH,
Emmanuel Charpentier
was able to give
a *correct* solution before I have been able to *correctly* state the
problem.
Emmanuel Charpentier
On Sat, 11 Dec 2010 22:58:10 +, Emmanuel Charpentier wrote :
[ Snip... ]
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Dear list,
see comment at end.
On Sat, 11 Dec 2010 22:58:10 +, Emmanuel Charpentier wrote :
Dear list,
Inspired by the original Knuth tools, and for paedaogical reasons, I
wish to produce a document presenting some source code with interspersed
comments in the source (see Knuth's
(or, in the case of odfWeave, in the text part), and spice
it with \end{verbatim} comments.. \begin{verbatim} chunks. This way, I
lose any guarantee of consistency between commented text and effective
code.
Any other idea ?
Emmanuel Charpentier
++-multilib package) and Debian
Squeeze (32 bits) and to test BRugs quickly without apparent problems.
HTH,
Emmanuel Charpentier
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is much more convenient to
use nowadays with R on a Unix-like platform than either WinBUGS or
OpenBUGS). I planned to submit it to Martyn Plummer, but got
interrupted...
HTH,
Emmanuel Charpentier
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know, the sort of ... thing ... that hit the fan when
you've been coaxed to accept Excel spreatsheet as dats sets).
HTH,
Emmanuel Charpentier
Le lundi 10 mai 2010 à 16:06 -0400, Michael H a écrit :
R experts,
I am working with large multivariable data
Sorry for this late answer (I've had a seriously nonmaskable interrupt).
Since I have technical questions not related to R, I take the liberty to
follow this up by e-mail.
I might post a followup summary if another R problem arises...
Emmanuel
values, which
will make the regression program choke).
So please quench my thirst : what exactly is MH.Index supposed to be ?
How is it measured, estimated, guessed or divined ?
HTH,
Emmanuel Charpentier
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https
with your
model, which can't be fitted unless you get at least a rough idea of
their precision.
HTH,
Emmanuel Charpentier, DDS, MSc
best regards,
kay
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a shortcoming of the asin(sqrt())
transformation.
HTH,
Emmanuel Charpentier
Le vendredi 16 avril 2010 à 00:15 -0800, Kay Cichini a écrit :
thanks thierry,
i considered this transformations already, but variance is not stabilized
and/or normality is neither
Le mercredi 07 avril 2010 à 18:03 +1000, William Venables a écrit :
[ Snip ... ]
[ ... ] The effect is
somewhat like that of the use of the .Data directory in S-PLUS, (a
program not unlike R), though somewhat more manually driven.
I'm not sure
and not always
succeed (numerical difficulties. Furthermore, the results of a Byesian
analysis might not be what you seek...
HTH,
Emmanuel Charpentier
Le lundi 05 avril 2010 à 11:34 +0100, Desmond Campbell a écrit :
Dear all,
I want to do a logistic
or that you are able to
express the (log-)density of the non-standard distribution you wish to
use). But, again, no p-values in sight. Would you settle for Bayes
factors between two models ? or DIC comparisons ?
HTH,
Emmanuel Charpentier
An old (Lisp ? C ?) quote, whose author escapes me now, was :
syntactic sugar causes cancer of the semicolon
.. but nowadays semicolons are rarely used in real-life R.
Emmanuel Charpentier
PS and, BTW, neither C nor Lisp have much use for semicolons
Le jeudi 18 mars 2010 à 15:49 -0400, Duncan Murdoch a écrit :
On 18/03/2010 3:10 PM, Emmanuel Charpentier wrote:
An old (Lisp ? C ?) quote, whose author escapes me now, was :
syntactic sugar causes cancer of the semicolon
.. but nowadays semicolons are rarely used in real-life R
Debian as a (desirable) alternative to Ubuntu.
HTH,
Emmanuel Charpentier, DDS, MSc
affiliation withdrawn,
notwithstanding Frank Harrell's
: If you hear not validated or validated, question it.
My message : timeo apothicarios et dona ferentes
Emmanuel Charpentier
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server, VNC/RDP,
Linux) with your *local* friendly help. Again, the R help list is
*definitely* *NOT* the right place for learning about the care and
feeding of computers.
HTH,
Emmanuel Charpentier
preparing to be shot
to data-representation problem in R.
Any thoughts ?
Emmanuel Charpentier
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that should be requested reading (and maybe hinted at in
lm()'s help page) :
http://www.stats.ox.ac.uk/pub/MASS3/Exegeses.pdf
(BTW, despite is age, MASS *is* requested reading, and Bill Venables'
exegeses should be part of it).
HTH,
--
Emmanuel Charpentier, DDS, MsC
Le mercredi 03 février 2010 à 09:23 -0600, Peng Yu a écrit :
On Wed, Feb 3, 2010 at 2:12 AM, Emmanuel Charpentier
charp...@bacbuc.dyndns.org wrote:
Le mercredi 03 février 2010 à 00:01 -0500, David Winsemius a écrit :
On Feb 2, 2010, at 11:38 PM, Peng Yu wrote:
?contrast in the contrast
, but might be
the easiest solution if this program is (as it seems according to your
partial explanations) a simple filter (read data, munch them, spit
output) not using windows-specific functions or system calls).
HTH,
Emmanuel Charpentier
R code in a pgsql function in PostgreSQL).
HTH,
Emmanuel Charpentier
BTW, there exist a R database Special Interest Group, with a mailing
list. Lookup their archive, and maybe ask a (slightly less general, if
possible) version of your question
. This should reduce
the importance of the problem.
Sincerely,
Emmanuel Charpentier
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Le dimanche 08 novembre 2009 à 19:05 -0600, Frank E Harrell Jr a écrit :
Emmanuel Charpentier wrote:
Le dimanche 08 novembre 2009 à 17:07 -0200, Iuri Gavronski a écrit :
Hi,
I would like to fit Logit models for ordered data, such as those
suggested by Greene (2003), p. 736.
Does
be interpreted as numbers (such as f-paste(F,
as.character(v))).
Any help is appreciated!
HTH,
Emmanuel Charpentier
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dependent variable is ordinal and my independent
variables are ratio/intervalar.
Numeric ? Then maybe some recoding/transformation is in order ... in
which case Design/rms might or might not be useful.
HTH,
Emmanuel Charpentier
yourself, look at the histogram of the bootstrap
distribution of median(x). Contrast with the bootstrap distribution of
mean(x). Meditate. Conclude...
HTH,
Emmanuel Charpentier
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oversaw that.
With my apologies,
Emmanuel Charpentier
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: what in h*ll are valid arguments to
mcp() beyond Tukey ??? Curently, you'll have to dig in the source to
learn that...).
HTH
Emmanuel Charpentier
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list archives didn't turn up
anything relevant. This error survived restarting OOo, restarting R,
restarting its enclosing Emacs session and even rebooting the damn
hardware...
Any idea ?
Emmanuel Charpentier
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that.
Could you help me and tell me what to do? Or tell me where to find help on
this topic?
?anova? Check the test argument ...:-)
Emmanuel Charpentier
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,
Emmanuel Charpentier
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did look that. Tjhe problem is that your code has dire warnings not to
call it with a caption more than once in a figure=TRUE (sic..) chunk.
Thanks,
*I* thank *you, Max,
Emmanuel Charpentier
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,
Emmanuel Charpentier
Annex : log of compilation with fig=true, results=xml.
odfWeave(Test1Src.odt, Test1.odt)
Copying Test1Src.odt
Setting wd to /tmp/RtmpenMTgz/odfWeave3023572231
Unzipping ODF file using unzip -o Test1Src.odt
Archive: Test1Src.odt
extracting
Le mardi 30 juin 2009 à 14:51 -0400, Max a écrit :
I just put a new version on cran...
Now, *that's* support !!! bug report at 17:31, acknowledgement at 20:12,
(probable) bug fix at 20:51. Bravo, bravissimo, Max !
Try that, SAS support !
Emmanuel
. And
the real meaning of p and its usefulness has been discussed, disputed
and fought over at exceedingly large lengths in the past 80 years.
Of course, if you have an instructor to please ...
HTH,
Emmanuel Charpentier
.
HTH,
Emmanuel Charpentier
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)
independent linear equations with nrow(dataset) unknowns (the beta[i]),
whose solution is trivially beta[i]=log(x[i]/n[i])-log(sum(x)/sum(n),
except when n[i]=0 in which case your equation has no solution.
Could you try to re-express your problem ?
Emmanuel
...
Emmanuel Charpentier
And we are left with
nothing: no result file was produced since the calculations were
interrumpted!
Consequently, I am looking for a way to accelerate calculations with
ME() of spdep and to save the results
case diagnostics.
Thank you very much ! I think that this package was expected ...
Emmanuel Charpentier
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PLEASE do read the posting
?
May some kind soul point me to the right direction ? (He may even
further my shame by telling me how he retrieved the relevant
information...).
Sincerely,
Emmanuel Charpentier
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Emmanuel Charpentier
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homework, get lost !
Emmanuel Charpentier
Is optim in the stats package the right function to use?
Also, I can't quite figure out how to specify the constraints.
Thank you!
-Stu
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,
Emmanuel Charpentier
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to exist : I checked...)
Emmanuel Charpentier
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and provide
] filename Foo
[1] v m b y g u r f y q
ls()
[1] bar
Good enough for you ?
HTH,
Emmanuel Charpentier
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PLEASE do read the posting
is much more professional.
Irony squared ?
This *must* go in the fortunes file !
Emmanuel Charpentier
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some routines to dump SQL tables / R dataframes in Excel tor returning
back to the original data author...
HTH
Emmanuel Charpentier
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...). In
doubt, use parentheses.
So try ...+(1|(S:A)/H), just in case...
You might also try to define it outside the model by adding variables :
AT-within(AT,{SA=S:A, SAH=SA:H[,drop=TRUE]})
AAT-lmer(y~S+A+(1|SAH),data=AT,REML=TRUE)
:confused:
Enlightened ?
Emmanuel
Answering to myself (for future archive users' sake), more to come
(soon) :
Le jeudi 23 avril 2009 à 00:31 +0200, Emmanuel Charpentier a écrit :
Dear list,
I'd like to use multiple imputations to try and save a somewhat badly
mangled dataset (lousy data collection, worse than lousy
Seconded !
Emmanuel Charpentier
Le lundi 02 mars 2009 à 21:06 -0700, Greg Snow a écrit :
-Original Message-
From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-
project.org] On Behalf Of Prof Brian Ripley
Sent: Monday, March 02
* ! ) ; maybe a variable change (log ?) might be in order ?
This can be assessed only on the full data.
HTH,
Emmanuel Charpentier
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PLEASE
) variable in two :
observed (logical), and value (observed value if observed, detection
limit if not) and include these two data in your model. You probably
will run into numerical difficulties due to the (built-in total
separation...).
HTH,
Emmanuel
Danke sehr, herr Professor ! This one escaped me (notably because it's a
trifle far from my current interests...).
Emmanuel Charpentier
Le samedi 25 avril 2009 à 08:25 -0500, Frank E Harrell Jr a écrit :
Emmanuel Charpentier wrote:
Le vendredi 24 avril
...).
Emmanuel Charpentier
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).
Does anybody has a nice solution, ideally with a possible solution in R?
Plot on a torus. Should be trivial in R once you've found the torus
feeder for your printer... :-)
Emmanuel Charpentier
Thanks in advance!
Johannes
--
Project Coordinator
Dear Ben,
Le samedi 18 avril 2009 à 23:37 +, Ben Bolker a écrit :
Emmanuel Charpentier charpent at bacbuc.dyndns.org writes:
I forgot to add that yes, I've done my homework, and that it seems to me
that answers pointing to zero-inflated Poisson (and negative binomial
,
Emmanuel Charpentier
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the damn thing and study the
distribution of my contrasts. I'd still been hard pressed to formally
test hypotheses on factors...
Any ideas ?
Emmanuel Charpentier
Le samedi 18 avril 2009 à 19:28 +0200, Emmanuel Charpentier a écrit :
Dear list,
I have
with 1 and n_res dof, which
happens (but that's not happenstance...) to be the *square* of a t with
n_dof.
May I suggest consulting a textbook *before* flunking ANOVA 101 ?
Emmanuel Charpentier
summary() might be preferred because it also
provides
as I can judge...
Pr Bates seems to answer readily any (sensible) questions on the ME
mailing list, where you will also find folks much more authorized than
yours truly to answer this and that question...
HTH,
Emmanuel Charpentier
Thanks.
Jun
On Thu
, however, that the embedded EPS
images are not editable in-place by OpenOffice nor, as far as I know, by
MS Word. But my point was to *avoid* post-production as much as humanly
possible (I tend to be inhumanly lazy...).
HTH,
Emmanuel Charpentier
All
Le vendredi 03 avril 2009 à 20:01 -0400, Murray Cooper a écrit :
For science yes. For pleasure I'll still take a pint instead of 570ml!
Snip
Yes, but do you realize that you'll have to pee in fl. oz ? Aie ...
Emmanuel Charpentier
Emmanuel Charpentier
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reauire(MASS) ; ?predict.lda should enlighten you. Glancing at VR4
might be a bit more illuminating...
HTH
Emmanuel Charpentier
Le vendredi 03 avril 2009 à 22:29 +0200, Pavel Kúr a écrit :
Hello!
I need some help with the linear discriminant analysis
Emmanuel Charpentier
who has served his time with
pounds per cubic feet, furlongs
per fortnight, BTU and other
figments
-mixed-models
SIG mailing list with some profit...
Emmanuel Charpentier
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of the direction of the vectors between points
(angles 0-360°)?
testdata - matrix(1:8, nrow=4, ncol=2,
dimnames=list(c(A,B,C,D), c(x,y))
?atan2 ; ?outer
Emmanuel Charpentier
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of it. I intended to replace some
missing dates, with something computed from other dates and mean time
intervals).
Any thoughs ?
Emmanuel Charpentier
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-90
On Tue, 17 Mar 2009 06:53:20 +, Emmanuel Charpentier wrote :
Dear list,
+ (and -) being defined for difftime class, I expected mean() to
return something sensible. This is only half-true :
mean(c(1:5, 5:1),na.rm=TRUE)
[1] 3
mean(as.difftime(c(1:5, 5:1),unit=mins),na.rm
lme4 if/when a consensus on
denominator DFs can be reached :-)...). What can you infer in good faith
from such a mess ?
Emmanuel Charpentier
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not become available
with more or less of an effort, but I can't see the point.
Emmanuel Charpentier
Le dimanche 08 mars 2009 à 16:08 +, Barry Rowlingson a écrit :
I think the situation is worse than messy. If a client comes in with data
Le dimanche 08 mars 2009 à 13:22 -0500, Dirk Eddelbuettel a écrit :
On 8 March 2009 at 13:27, Duncan Murdoch wrote:
| But we don't even have that data, since CRAN is distributed across lots
| of mirrors.
On 8 March 2009 at 19:01, Emmanuel Charpentier wrote:
| As far as I can see (but I
...
Emmanuel Charpentier
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On Mon, 08 Sep 2008 01:45:51 +0200, Peter Dalgaard wrote :
Emmanuel Charpentier wrote:
Dear list,
[ Snip ... ]
This looks reasonably sane, I think. The last loop could be d[] -
lapply(d, conv1, from, to), but I think that is cosmetic. You can't
really do much better because
,to))
else return(v)
}
for(i in names(d)) d[,i]-conv1(d[,i],from,to)
return(d)
}
Any advice for enhancement is welcome...
Sincerely yours,
Emmanuel Charpentier
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Emmanuel Charpentier
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Le dimanche 17 août 2008 à 09:36 +, Dieter Menne a écrit :
[ Snip .. ]
Trellis graphics are a bit like hash functions: you can be close to the
target, but get a far-off result.
Nice candidate for a fortune() entry ...
Emmanuel Charpentier
...
Emmanuel Charpentier
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packages:
[1] stats graphics grDevices utils datasets methods
base
other attached packages:
[1] odfWeave_0.7.6 XML_1.96-0 lattice_0.17-13
loaded via a namespace (and not attached):
[1] grid_2.7.1 tools_2.7.1
Hoping this might help,
Emmanuel
packages:
[1] stats graphics grDevices utils datasets methods
base
other attached packages:
[1] odfWeave_0.7.6 XML_1.96-0 lattice_0.17-13
loaded via a namespace (and not attached):
[1] grid_2.7.1 tools_2.7.1
Hoping this might help,
Emmanuel
(s). There also are some
contributed packages that might help in special situations : biglm, birch.
HTH,
Emmanuel Charpentier
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with my current work on this and some
non-unsignificant sickness...
Emmanuel Charpentier
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the original names,
you should subset the original data frame, with casesCNST[,c(1,6)] or
casesCNST[,c(case,expected)].
HTH,
Emmanuel Charpentier
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if you want them (no guarantees : caveat
emptor).
I plan to check them extensively and propose them to the SIG-Debian
mailing list, but this will have to wait...
HTH,
Emmanuel Charpentier
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.
HTH,
Emmanuel Charpentier
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of this (probable) homework...
Emmanuel Charpentier
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of large data management.
HTH,
Emmanuel Charpentier
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. Unless you *have* to have an EMF output (it happens, I know
...), youd'better use use this format directly.
HTH
Emmanuel Charpentier
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untestable hypotheses...).
Emmanuel Charpentier
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and provide
variability that you'd have
introduced yourself : what is the point ?
HTH,
Emmanuel Charpentier
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Lumley's paper in R News 2001-3 (Programmer’s Niche: Macros
in R\n Overcoming R’s virtues).
HTH,
Emmanuel Charpentier
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PLEASE do
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