[R] Followup [Can't install or upgrade the "PKI" package on a Debian testing system]

2016-12-05 Thread Emmanuel Charpentier
e.net/')", NOT install.packages('PKI',,'http://www.rforge.net/'), which, for some inscrutable reason (runaway proxying ?) fails the same way as before. A big Kudos and Thank You to Simon Urbanek, on behalf of not-so-stable distributions users ! Emmanuel Charpentier

[R] Can't install or upgrade the "PKI" package on a Debian testing system

2016-12-05 Thread Emmanuel Charpentier
Dear list, It seems that recent changes in openssl somehow broke the installation or update of the PKI package. This is probably specific of my setup(s) (Debian testing, updated frequently). Copy of a mail to Simon Urbanek (PKI maintainer), sent 5 days ago without reply nor acknowledgement

[R] FYI : XML 3.4.2 still breaks odfWeave 0.7.17

2011-08-14 Thread Emmanuel Charpentier
, Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.

[R] odfWeave 0.7.17 stutters on Debian testing 64-bit amd64 systems.

2011-05-14 Thread Emmanuel Charpentier
cross-posting to r-help and r-debian-sig, but I think that the issue is ... complicated and might not be as Debian-specific as it seems at first view. Sincerely, Emmanuel Charpentier Dear Max, A few days ago, I started to have problems with odfWeave 0.7.17

Re: [R] odfWeave 0.7.17 stutters on Debian testing 64-bit amd64 systems.

2011-05-14 Thread Emmanuel Charpentier
, the discrepancies between Ubuntu 11.04 and Debian testing, which are easier to explain : Debian has slightly more recent version). I'll try to downgrade the R xml package (easier) and report results. Again, thank you very much ! Emmanuel Charpentier On Sat, 14

Re: [R] odfWeave 0.7.17 stutters on Debian testing 64-bit amd64 systems.

2011-05-14 Thread Emmanuel Charpentier
to 3.4.0 by the update.packages(ask=FALSE) I'm used to do ... Thank you again ! Now I can again use a multiprocessor eficiently to run the same analyses on 18 datasets (thanks to mclapply (multicore)). A serious win in my case... Emmanuel Charpentier Le samedi

Re: [R] Multivariate binary response analysis

2010-12-14 Thread Emmanuel Charpentier
warning that the Spiegelhalter gang put in front of the WinBUGS manual still apply : MCMC sampling can be dangerous. To which I add model checking, convergence assessment and validation might eat more time than modeling itself. HTH, Emmanuel Charpentier

[R] Second summary [( S|odf)weave : how to intersperse (\LaTeX{}|odf) comments in source code ? Delayed R evaluation ?]

2010-12-13 Thread Emmanuel Charpentier
was able to give a *correct* solution before I have been able to *correctly* state the problem. Emmanuel Charpentier On Sat, 11 Dec 2010 22:58:10 +, Emmanuel Charpentier wrote : [ Snip... ] __ R-help@r

[R] Summary (Re: (S|odf)weave : how to intersperse (\LaTeX{}|odf) comments in source code ? Delayed R evaluation ?)

2010-12-12 Thread Emmanuel Charpentier
Dear list, see comment at end. On Sat, 11 Dec 2010 22:58:10 +, Emmanuel Charpentier wrote : Dear list, Inspired by the original Knuth tools, and for paedaogical reasons, I wish to produce a document presenting some source code with interspersed comments in the source (see Knuth's

[R] (S|odf)weave : how to intersperse (\LaTeX{}|odf) comments in source code ? Delayed R evaluation ?

2010-12-11 Thread Emmanuel Charpentier
(or, in the case of odfWeave, in the text part), and spice it with \end{verbatim} comments.. \begin{verbatim} chunks. This way, I lose any guarantee of consistency between commented text and effective code. Any other idea ? Emmanuel Charpentier

[R] Of possible interest for (Win|Open)BUGS users on Linux platforms

2010-10-22 Thread Emmanuel Charpentier
++-multilib package) and Debian Squeeze (32 bits) and to test BRugs quickly without apparent problems. HTH, Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help

Re: [R] Including a text file (JAGS model) in an R package

2010-08-16 Thread Emmanuel Charpentier
is much more convenient to use nowadays with R on a Unix-like platform than either WinBUGS or OpenBUGS). I planned to submit it to Martyn Plummer, but got interrupted... HTH, Emmanuel Charpentier __ R-help@r

Re: [R] Dataframe horizontal scrolling

2010-05-10 Thread Emmanuel Charpentier
know, the sort of ... thing ... that hit the fan when you've been coaxed to accept Excel spreatsheet as dats sets). HTH, Emmanuel Charpentier Le lundi 10 mai 2010 à 16:06 -0400, Michael H a écrit : R experts, I am working with large multivariable data

Re: [R] glmer with non integer weights

2010-04-22 Thread Emmanuel Charpentier
Sorry for this late answer (I've had a seriously nonmaskable interrupt). Since I have technical questions not related to R, I take the liberty to follow this up by e-mail. I might post a followup summary if another R problem arises... Emmanuel

Re: [R] glmer with non integer weights

2010-04-19 Thread Emmanuel Charpentier
values, which will make the regression program choke). So please quench my thirst : what exactly is MH.Index supposed to be ? How is it measured, estimated, guessed or divined ? HTH, Emmanuel Charpentier __ R-help@r-project.org mailing list https

Re: [R] glmer with non integer weights

2010-04-18 Thread Emmanuel Charpentier
with your model, which can't be fitted unless you get at least a rough idea of their precision. HTH, Emmanuel Charpentier, DDS, MSc best regards, kay __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman

Re: [R] glmer with non integer weights

2010-04-18 Thread Emmanuel Charpentier
a shortcoming of the asin(sqrt()) transformation. HTH, Emmanuel Charpentier Le vendredi 16 avril 2010 à 00:15 -0800, Kay Cichini a écrit : thanks thierry, i considered this transformations already, but variance is not stabilized and/or normality is neither

Re: [R] [R-pkgs] SOAR - Stored object caches for R

2010-04-08 Thread Emmanuel Charpentier
Le mercredi 07 avril 2010 à 18:03 +1000, William Venables a écrit : [ Snip ... ] [ ... ] The effect is somewhat like that of the use of the .Data directory in S-PLUS, (a program not unlike R), though somewhat more manually driven. I'm not sure

Re: [R] logistic regression in an incomplete dataset

2010-04-05 Thread Emmanuel Charpentier
and not always succeed (numerical difficulties. Furthermore, the results of a Byesian analysis might not be what you seek... HTH, Emmanuel Charpentier Le lundi 05 avril 2010 à 11:34 +0100, Desmond Campbell a écrit : Dear all, I want to do a logistic

Re: [R] Multilevel modeling with count variables

2010-03-27 Thread Emmanuel Charpentier
or that you are able to express the (log-)density of the non-standard distribution you wish to use). But, again, no p-values in sight. Would you settle for Bayes factors between two models ? or DIC comparisons ? HTH, Emmanuel Charpentier

Re: [R] recommendations on use of - operator

2010-03-18 Thread Emmanuel Charpentier
An old (Lisp ? C ?) quote, whose author escapes me now, was : syntactic sugar causes cancer of the semicolon .. but nowadays semicolons are rarely used in real-life R. Emmanuel Charpentier PS and, BTW, neither C nor Lisp have much use for semicolons

Re: [R] recommendations on use of - operator

2010-03-18 Thread Emmanuel Charpentier
Le jeudi 18 mars 2010 à 15:49 -0400, Duncan Murdoch a écrit : On 18/03/2010 3:10 PM, Emmanuel Charpentier wrote: An old (Lisp ? C ?) quote, whose author escapes me now, was : syntactic sugar causes cancer of the semicolon .. but nowadays semicolons are rarely used in real-life R

Re: [R] R on Linux - a primer

2010-03-16 Thread Emmanuel Charpentier
Debian as a (desirable) alternative to Ubuntu. HTH, Emmanuel Charpentier, DDS, MSc affiliation withdrawn, notwithstanding Frank Harrell's

Re: [R] Use of R in clinical trials

2010-02-23 Thread Emmanuel Charpentier
: If you hear not validated or validated, question it. My message : timeo apothicarios et dona ferentes Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE

[R] (quite possibly OT) Re: how to make R running on a Linux server display a plot on a Windows machine

2010-02-22 Thread Emmanuel Charpentier
server, VNC/RDP, Linux) with your *local* friendly help. Again, the R help list is *definitely* *NOT* the right place for learning about the care and feeding of computers. HTH, Emmanuel Charpentier preparing to be shot

[R] Data views (Re: (Another) Bates fortune?)

2010-02-07 Thread Emmanuel Charpentier
to data-representation problem in R. Any thoughts ? Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org

Re: [R] What are Type II or III contrast? (contrast() in contrast package)

2010-02-03 Thread Emmanuel Charpentier
that should be requested reading (and maybe hinted at in lm()'s help page) : http://www.stats.ox.ac.uk/pub/MASS3/Exegeses.pdf (BTW, despite is age, MASS *is* requested reading, and Bill Venables' exegeses should be part of it). HTH, -- Emmanuel Charpentier, DDS, MsC

Re: [R] What are Type II or III contrast? (contrast() in contrast package)

2010-02-03 Thread Emmanuel Charpentier
Le mercredi 03 février 2010 à 09:23 -0600, Peng Yu a écrit : On Wed, Feb 3, 2010 at 2:12 AM, Emmanuel Charpentier charp...@bacbuc.dyndns.org wrote: Le mercredi 03 février 2010 à 00:01 -0500, David Winsemius a écrit : On Feb 2, 2010, at 11:38 PM, Peng Yu wrote: ?contrast in the contrast

Re: [R] system vs shell wait command

2010-01-24 Thread Emmanuel Charpentier
, but might be the easiest solution if this program is (as it seems according to your partial explanations) a simple filter (read data, munch them, spit output) not using windows-specific functions or system calls). HTH, Emmanuel Charpentier

Re: [R] How to use SQL code in R

2009-11-16 Thread Emmanuel Charpentier
R code in a pgsql function in PostgreSQL). HTH, Emmanuel Charpentier BTW, there exist a R database Special Interest Group, with a mailing list. Lookup their archive, and maybe ask a (slightly less general, if possible) version of your question

Re: [R] What parts of 'Statistical Models in S' are not applicable to R?

2009-11-11 Thread Emmanuel Charpentier
. This should reduce the importance of the problem. Sincerely, Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org

Re: [R] Models for Discrete Choice in R

2009-11-09 Thread Emmanuel Charpentier
Le dimanche 08 novembre 2009 à 19:05 -0600, Frank E Harrell Jr a écrit : Emmanuel Charpentier wrote: Le dimanche 08 novembre 2009 à 17:07 -0200, Iuri Gavronski a écrit : Hi, I would like to fit Logit models for ordered data, such as those suggested by Greene (2003), p. 736. Does

Re: [R] lme4 and incomplete block design

2009-11-08 Thread Emmanuel Charpentier
be interpreted as numbers (such as f-paste(F, as.character(v))). Any help is appreciated! HTH, Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read

Re: [R] Models for Discrete Choice in R

2009-11-08 Thread Emmanuel Charpentier
dependent variable is ordinal and my independent variables are ratio/intervalar. Numeric ? Then maybe some recoding/transformation is in order ... in which case Design/rms might or might not be useful. HTH, Emmanuel Charpentier

Re: [R] Bootstrap inference for the sample median?

2009-08-30 Thread Emmanuel Charpentier
yourself, look at the histogram of the bootstrap distribution of median(x). Contrast with the bootstrap distribution of mean(x). Meditate. Conclude... HTH, Emmanuel Charpentier __ R-help@r-project.org mailing list

Re: [R] Testing year effect in lm() ***failed first time, sending again

2009-08-06 Thread Emmanuel Charpentier
oversaw that. With my apologies, Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html

Re: [R] Testing year effect in lm() ***failed first time, sending again

2009-08-05 Thread Emmanuel Charpentier
: what in h*ll are valid arguments to mcp() beyond Tukey ??? Curently, you'll have to dig in the source to learn that...). HTH Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch

[R] odfWeave : sudden and unexplained error

2009-08-01 Thread Emmanuel Charpentier
list archives didn't turn up anything relevant. This error survived restarting OOo, restarting R, restarting its enclosing Emacs session and even rebooting the damn hardware... Any idea ? Emmanuel Charpentier __ R

Re: [R] How to perform a Likelihood-ratio test?

2009-07-13 Thread Emmanuel Charpentier
that. Could you help me and tell me what to do? Or tell me where to find help on this topic? ?anova? Check the test argument ...:-) Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch

Re: [R] Unix commands on R

2009-07-08 Thread Emmanuel Charpentier
, Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained

Re: [R] odfWeave : problems with odfInsertPlot() and odfFigureCaption()

2009-07-01 Thread Emmanuel Charpentier
did look that. Tjhe problem is that your code has dire warnings not to call it with a caption more than once in a figure=TRUE (sic..) chunk. Thanks, *I* thank *you, Max, Emmanuel Charpentier __ R-help@r

[R] odfWeave : problems with odfInsertPlot() and odfFigureCaption()

2009-06-30 Thread Emmanuel Charpentier
, Emmanuel Charpentier Annex : log of compilation with fig=true, results=xml. odfWeave(Test1Src.odt, Test1.odt) Copying Test1Src.odt Setting wd to /tmp/RtmpenMTgz/odfWeave3023572231 Unzipping ODF file using unzip -o Test1Src.odt Archive: Test1Src.odt extracting

Re: [R] NaiveBayes fails with one input variable (caret and klarR packages)

2009-06-30 Thread Emmanuel Charpentier
Le mardi 30 juin 2009 à 14:51 -0400, Max a écrit : I just put a new version on cran... Now, *that's* support !!! bug report at 17:31, acknowledgement at 20:12, (probable) bug fix at 20:51. Bravo, bravissimo, Max ! Try that, SAS support ! Emmanuel

Re: [R] questions about meta-analysis

2009-06-27 Thread Emmanuel Charpentier
. And the real meaning of p and its usefulness has been discussed, disputed and fought over at exceedingly large lengths in the past 80 years. Of course, if you have an instructor to please ... HTH, Emmanuel Charpentier

Re: [R] ANOVA with means and SDs as input

2009-06-26 Thread Emmanuel Charpentier
. HTH, Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented

Re: [R] User defined GLM?

2009-06-22 Thread Emmanuel Charpentier
) independent linear equations with nrow(dataset) unknowns (the beta[i]), whose solution is trivially beta[i]=log(x[i]/n[i])-log(sum(x)/sum(n), except when n[i]=0 in which case your equation has no solution. Could you try to re-express your problem ? Emmanuel

Re: [R] large numbers of observations using ME() of spdep

2009-06-06 Thread Emmanuel Charpentier
... Emmanuel Charpentier And we are left with nothing: no result file was produced since the calculations were interrumpted! Consequently, I am looking for a way to accelerate calculations with ME() of spdep and to save the results

Re: [R] New Meta-Analysis Package (metafor)

2009-06-05 Thread Emmanuel Charpentier
case diagnostics. Thank you very much ! I think that this package was expected ... Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting

[R] Small mystery : passing a subset= argument to lme|lm through ...

2009-06-04 Thread Emmanuel Charpentier
? May some kind soul point me to the right direction ? (He may even further my shame by telling me how he retrieved the relevant information...). Sincerely, Emmanuel Charpentier __ R-help@r-project.org mailing list

Re: [R] Can I Compile R with MS Access 2003 Developer Extensions?

2009-05-31 Thread Emmanuel Charpentier
, Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.

Re: [R] Linear Regression with Constraints

2009-05-27 Thread Emmanuel Charpentier
homework, get lost ! Emmanuel Charpentier Is optim in the stats package the right function to use? Also, I can't quite figure out how to specify the constraints. Thank you! -Stu __ R-help@r-project.org

Re: [R] Linear Regression with Constraints

2009-05-27 Thread Emmanuel Charpentier
, Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self

Re: [R] How to google for R stuff?

2009-05-20 Thread Emmanuel Charpentier
to exist : I checked...) Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide

Re: [R] How to save R clean sessions in BATCH mode?

2009-05-18 Thread Emmanuel Charpentier
] filename Foo [1] v m b y g u r f y q ls() [1] bar Good enough for you ? HTH, Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting

Re: [R] Do you use R for data manipulation?

2009-05-11 Thread Emmanuel Charpentier
is much more professional. Irony squared ? This *must* go in the fortunes file ! Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide

Re: [R] Do you use R for data manipulation?

2009-05-06 Thread Emmanuel Charpentier
some routines to dump SQL tables / R dataframes in Excel tor returning back to the original data author... HTH Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help

Re: [R] Help with lme4 model specification

2009-05-06 Thread Emmanuel Charpentier
...). In doubt, use parentheses. So try ...+(1|(S:A)/H), just in case... You might also try to define it outside the model by adding variables : AT-within(AT,{SA=S:A, SAH=SA:H[,drop=TRUE]}) AAT-lmer(y~S+A+(1|SAH),data=AT,REML=TRUE) :confused: Enlightened ? Emmanuel

Re: [R] Multiple imputations : wicked dataset. Need advice for follow-up to a possible solution.

2009-04-27 Thread Emmanuel Charpentier
Answering to myself (for future archive users' sake), more to come (soon) : Le jeudi 23 avril 2009 à 00:31 +0200, Emmanuel Charpentier a écrit : Dear list, I'd like to use multiple imputations to try and save a somewhat badly mangled dataset (lousy data collection, worse than lousy

Re: [R] rounding problem

2009-04-27 Thread Emmanuel Charpentier
Seconded ! Emmanuel Charpentier Le lundi 02 mars 2009 à 21:06 -0700, Greg Snow a écrit : -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r- project.org] On Behalf Of Prof Brian Ripley Sent: Monday, March 02

Re: [R] Loess over split data

2009-04-25 Thread Emmanuel Charpentier
* ! ) ; maybe a variable change (log ?) might be in order ? This can be assessed only on the full data. HTH, Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE

Re: [R] Multiple Imputation in mice/norm

2009-04-25 Thread Emmanuel Charpentier
) variable in two : observed (logical), and value (observed value if observed, detection limit if not) and include these two data in your model. You probably will run into numerical difficulties due to the (built-in total separation...). HTH, Emmanuel

Re: [R] Multiple Imputation in mice/norm

2009-04-25 Thread Emmanuel Charpentier
Danke sehr, herr Professor ! This one escaped me (notably because it's a trifle far from my current interests...). Emmanuel Charpentier Le samedi 25 avril 2009 à 08:25 -0500, Frank E Harrell Jr a écrit : Emmanuel Charpentier wrote: Le vendredi 24 avril

[R] Multiple imputations : wicked dataset ? Wicked computers ? Am I cursed ? (or stupid ?)

2009-04-22 Thread Emmanuel Charpentier
...). Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self

Re: [R] graph with 15 combinations

2009-04-20 Thread Emmanuel Charpentier
). Does anybody has a nice solution, ideally with a possible solution in R? Plot on a torus. Should be trivial in R once you've found the torus feeder for your printer... :-) Emmanuel Charpentier Thanks in advance! Johannes -- Project Coordinator

Re: [R] Modelling an incomplete Poisson distribution ?

2009-04-19 Thread Emmanuel Charpentier
Dear Ben, Le samedi 18 avril 2009 à 23:37 +, Ben Bolker a écrit : Emmanuel Charpentier charpent at bacbuc.dyndns.org writes: I forgot to add that yes, I've done my homework, and that it seems to me that answers pointing to zero-inflated Poisson (and negative binomial

[R] Modelling an incomplete Poisson distribution ?

2009-04-18 Thread Emmanuel Charpentier
, Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self

Re: [R] Modelling an incomplete Poisson distribution ?

2009-04-18 Thread Emmanuel Charpentier
the damn thing and study the distribution of my contrasts. I'd still been hard pressed to formally test hypotheses on factors... Any ideas ? Emmanuel Charpentier Le samedi 18 avril 2009 à 19:28 +0200, Emmanuel Charpentier a écrit : Dear list, I have

Re: [R] F test

2009-04-16 Thread Emmanuel Charpentier
with 1 and n_res dof, which happens (but that's not happenstance...) to be the *square* of a t with n_dof. May I suggest consulting a textbook *before* flunking ANOVA 101 ? Emmanuel Charpentier summary() might be preferred because it also provides

Re: [R] F test

2009-04-16 Thread Emmanuel Charpentier
as I can judge... Pr Bates seems to answer readily any (sensible) questions on the ME mailing list, where you will also find folks much more authorized than yours truly to answer this and that question... HTH, Emmanuel Charpentier Thanks. Jun On Thu

Re: [R] Cross-platforms solution to export R graphs

2009-04-09 Thread Emmanuel Charpentier
, however, that the embedded EPS images are not editable in-place by OpenOffice nor, as far as I know, by MS Word. But my point was to *avoid* post-production as much as humanly possible (I tend to be inhumanly lazy...). HTH, Emmanuel Charpentier All

Re: [R] [OT ?] rant (was : Re: Conversions From standard to metricunits)

2009-04-04 Thread Emmanuel Charpentier
Le vendredi 03 avril 2009 à 20:01 -0400, Murray Cooper a écrit : For science yes. For pleasure I'll still take a pint instead of 570ml! Snip Yes, but do you realize that you'll have to pee in fl. oz ? Aie ... Emmanuel Charpentier

Re: [R] Basic doubts on the use of several script files in R batch mode

2009-04-04 Thread Emmanuel Charpentier
Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.

Re: [R] Discriminant Analysis - Obtaining Classification Functions

2009-04-03 Thread Emmanuel Charpentier
reauire(MASS) ; ?predict.lda should enlighten you. Glancing at VR4 might be a bit more illuminating... HTH Emmanuel Charpentier Le vendredi 03 avril 2009 à 22:29 +0200, Pavel Kúr a écrit : Hello! I need some help with the linear discriminant analysis

[R] [OT ?] rant (was : Re: Conversions From standard to metric units)

2009-04-03 Thread Emmanuel Charpentier
Emmanuel Charpentier who has served his time with pounds per cubic feet, furlongs per fortnight, BTU and other figments

Re: [R] LME as part of meta-analysis

2009-03-28 Thread Emmanuel Charpentier
-mixed-models SIG mailing list with some profit... Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org

Re: [R] Calculate directions between points

2009-03-28 Thread Emmanuel Charpentier
of the direction of the vectors between points (angles 0-360°)? testdata - matrix(1:8, nrow=4, ncol=2, dimnames=list(c(A,B,C,D), c(x,y)) ?atan2 ; ?outer Emmanuel Charpentier __ R-help@r

[R] Mean of difftime vectors : code infelicity or intended behaviour ?

2009-03-17 Thread Emmanuel Charpentier
of it. I intended to replace some missing dates, with something computed from other dates and mean time intervals). Any thoughs ? Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch

Re: [R] Mean of difftime vectors : code infelicity or intended behaviour ?

2009-03-17 Thread Emmanuel Charpentier
-90 On Tue, 17 Mar 2009 06:53:20 +, Emmanuel Charpentier wrote : Dear list, + (and -) being defined for difftime class, I expected mean() to return something sensible. This is only half-true : mean(c(1:5, 5:1),na.rm=TRUE) [1] 3 mean(as.difftime(c(1:5, 5:1),unit=mins),na.rm

Re: [R] popular R packages

2009-03-08 Thread Emmanuel Charpentier
lme4 if/when a consensus on denominator DFs can be reached :-)...). What can you infer in good faith from such a mess ? Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman

Re: [R] popular R packages

2009-03-08 Thread Emmanuel Charpentier
not become available with more or less of an effort, but I can't see the point. Emmanuel Charpentier Le dimanche 08 mars 2009 à 16:08 +, Barry Rowlingson a écrit : I think the situation is worse than messy. If a client comes in with data

Re: [R] popular R packages

2009-03-08 Thread Emmanuel Charpentier
Le dimanche 08 mars 2009 à 13:22 -0500, Dirk Eddelbuettel a écrit : On 8 March 2009 at 13:27, Duncan Murdoch wrote: | But we don't even have that data, since CRAN is distributed across lots | of mirrors. On 8 March 2009 at 19:01, Emmanuel Charpentier wrote: | As far as I can see (but I

Re: [R] OT: A test with dependent samples.

2009-02-15 Thread Emmanuel Charpentier
... Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained

Re: [R] Request for advice on character set conversions (those damn Excel files, again ...)

2008-09-08 Thread Emmanuel Charpentier
On Mon, 08 Sep 2008 01:45:51 +0200, Peter Dalgaard wrote : Emmanuel Charpentier wrote: Dear list, [ Snip ... ] This looks reasonably sane, I think. The last loop could be d[] - lapply(d, conv1, from, to), but I think that is cosmetic. You can't really do much better because

[R] Request for advice on character set conversions (those damn Excel files, again ...)

2008-09-07 Thread Emmanuel Charpentier
,to)) else return(v) } for(i in names(d)) d[,i]-conv1(d[,i],from,to) return(d) } Any advice for enhancement is welcome... Sincerely yours, Emmanuel Charpentier __ R-help@r-project.org mailing list

Re: [R] Sending ... to a C external

2008-08-22 Thread Emmanuel Charpentier
, Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal

Re: [R] Lattice: problem using panel.superpose and panel.groups

2008-08-20 Thread Emmanuel Charpentier
Le dimanche 17 août 2008 à 09:36 +, Dieter Menne a écrit : [ Snip .. ] Trellis graphics are a bit like hash functions: you can be close to the target, but get a far-off result. Nice candidate for a fortune() entry ... Emmanuel Charpentier

Re: [R] FYI: APL in R

2008-08-20 Thread Emmanuel Charpentier
... Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.

[R] Possible buglet (wart ?) of odfWeave 0.7.6 (with workaround)

2008-08-12 Thread Emmanuel Charpentier
packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] odfWeave_0.7.6 XML_1.96-0 lattice_0.17-13 loaded via a namespace (and not attached): [1] grid_2.7.1 tools_2.7.1 Hoping this might help, Emmanuel

[R] Possible buglet (wart ?) of odfWeave 0.7.6 (with workaround)

2008-08-12 Thread Emmanuel Charpentier
packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] odfWeave_0.7.6 XML_1.96-0 lattice_0.17-13 loaded via a namespace (and not attached): [1] grid_2.7.1 tools_2.7.1 Hoping this might help, Emmanuel

Re: [R] How to read HUGE data sets?

2008-02-28 Thread Emmanuel Charpentier
(s). There also are some contributed packages that might help in special situations : biglm, birch. HTH, Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help

Re: [R] odfWeave and xtable

2008-01-19 Thread Emmanuel Charpentier
with my current work on this and some non-unsignificant sickness... Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http

Re: [R] problem when extacting columns of a data frame in a new data frame

2008-01-08 Thread Emmanuel Charpentier
the original names, you should subset the original data frame, with casesCNST[,c(1,6)] or casesCNST[,c(case,expected)]. HTH, Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman

Re: [R] Installing R on ubuntu dapper

2008-01-07 Thread Emmanuel Charpentier
if you want them (no guarantees : caveat emptor). I plan to check them extensively and propose them to the SIG-Debian mailing list, but this will have to wait... HTH, Emmanuel Charpentier __ R-help@r-project.org

Re: [R] odfWeave cross-reference

2007-12-23 Thread Emmanuel Charpentier
. HTH, Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal

Re: [R] simple problems

2007-12-06 Thread Emmanuel Charpentier
of this (probable) homework... Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html

Re: [R] using eval(parse(text)) , gsub(pattern, replacement, x) , to process code within a loop/custom function

2007-12-06 Thread Emmanuel Charpentier
of large data management. HTH, Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html

Re: [R] odfWeave error

2007-12-03 Thread Emmanuel Charpentier
. Unless you *have* to have an EMF output (it happens, I know ...), youd'better use use this format directly. HTH Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r

Re: [R] meta-analysis on diagnostic tests (bivariate approach)

2007-11-30 Thread Emmanuel Charpentier
untestable hypotheses...). Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide

Re: [R] Unweighted meta-analysis

2007-11-26 Thread Emmanuel Charpentier
variability that you'd have introduced yourself : what is the point ? HTH, Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http

Re: [R] pass lm( ) a char vector as the variables to be included

2007-11-26 Thread Emmanuel Charpentier
Lumley's paper in R News 2001-3 (Programmer’s Niche: Macros in R\n Overcoming R’s virtues). HTH, Emmanuel Charpentier __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do

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