Re: [ESS] Error installing on ubuntu

re did you start from? I sometimes use the Debian/Ubuntu (that I used to > look after, now it is done by Seb, see https://tracker.debian.org/pkg/ess and > https://packages.ubuntu.com/search?suite=all=all=any=ess=sourcenames) > and sometimes I use melpa. It generally 'just works'. > &

Re: [ESS] brace_linter

termediate. A > beginner at most. So thanks for your patience and help. I'm hoping that I > can put something in my .emacs file to override this behavior ? > > > Mark > > [[alternative HTML version deleted]] > > ______ > E

Re: [ESS] Displaying R plots within an Emacs buffer

pect ratio won't change. Aha, thanks for the clarification. > > I've got it now working locally so that the aspect ratio is the same size > as the window that you use to view the svg. This I think is more flexible. Looking forward to that functionality :-) Best, R. -- Ramon Diaz-Uriarte

Re: [ESS] Displaying R plots within an Emacs buffer

st.svg shows now… > Status: 404 > Reason: Not Found -- Ramon Diaz-Uriarte Department of Biochemistry, Lab B-31 Facultad de Medicina Universidad Autónoma de Madrid Arzobispo Morcillo, 4 28029 Madrid Spain Phone: +34-91-497-2412 Email: rdia...@gmail.com r.d...@uam.es ramon.

[ESS] hs-show/hide-block and functions with definition over several lines

ply hs-show-block args) )) (advice-add 'hs-hide-block :around #'my-advice-for-hs-hide-block) (advice-add 'hs-show-block :around #'my-advice-for-hs-show-block) ;; If we run again the examples above, hs-hide/show-block hide/show ;; the blocks. ;; With the above, we can use Karthink's function

Re: [R] Strange degrees of freedom and SS from car::Anova with type II SS?

ty and the projections used by Anova() break down."). Again, thanks for clarifying my confusion. Best, Ramon > > Best, > John > > - > John Fox, Professor Emeritus > McMaster University > Hamilton, Ontario, Canada

[R] Strange degrees of freedom and SS from car::Anova with type II SS?

(m_1)^2) - sum(residuals(m_2)^2) -- Ramon Diaz-Uriarte Department of Biochemistry, Lab B-25 Facultad de Medicina Universidad Autónoma de Madrid Arzobispo Morcillo, 4 28029 Madrid Spain Phone: +34-91-497-2412 Email: rdia...@gmail.com ramon.d...@iib.uam.es http://ligarto.org/rdiaz _

Re: [R] On the Design of the R Language

://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Ramon Diaz-Uriarte Department of Biochemistry, Lab B-25 Facultad de Medicina Universidad Autónoma de Madrid Arzobispo

[R] OT: snow socket clusters with VirtualBox and VMware player (Linux host, Win guest)

been able to run snow and/or snowfall with socket clusters in a similar setup? Best, R. -- Ramon Diaz-Uriarte Structural Biology and Biocomputing Programme Spanish National Cancer Centre (CNIO) http://ligarto.org/rdiaz Phone: +34-91-732-8000 ext. 3019 Fax: +-34-91-224-6972

Re: [R] snow makeCluster (makeSOCKcluster) not working in R-2.11

, self-contained, reproducible code. -- Ramon Diaz-Uriarte Structural Biology and Biocomputing Programme Spanish National Cancer Centre (CNIO) http://ligarto.org/rdiaz Phone: +34-91-732-8000 ext. 3019 Fax: +-34-91-224-6972 __ R-help@r-project.org

Re: [R] as.ffdf.data.frame now breaks if using pattern

:/tmp/fftmp5be946bb.ff $z [1] d:/tmp/fftmp26c49ce.ff Jens -Ursprüngliche Nachricht- Von: Ramon Diaz-Uriarte rdia...@gmail.com Gesendet: Apr 7, 2010 7:01:23 PM An: r-help@r-project.org Betreff: as.ffdf.data.frame now breaks if using pattern Dear All, I am using package ff

[R] as.ffdf.data.frame now breaks if using pattern

is intentional or a bug. If intentional, what is the recommended way of using pattern now? Thanks, R. -- Ramon Diaz-Uriarte Structural Biology and Biocomputing Programme Spanish National Cancer Centre (CNIO) http://ligarto.org/rdiaz Phone: +34-91-732-8000 ext. 3019 Fax: +-34-91-224-6972

[R] validate (rms package) using step instead of fastbw

example of fastbw compared to step: library(MASS) ## for stepAIC and bwt data example(birthwt) library(rms) bwt.glm - glm(low ~ ., family = binomial, data = bwt) bwt.lrm - lrm(low ~ ., data = bwt) step(bwt.glm) ## same as stepAIC(bwt.glm) fastbw(bwt.lrm) -- Ramon Diaz-Uriarte Structural

Re: [R] validate (rms package) using step instead of fastbw

colleagues is that by doing variable selection, we are actually getting a worse model (as evidenced by the bias-corrected AUC, which is smaller if attempting variable selection). Best, R. On Fri, Feb 12, 2010 at 3:13 PM, Frank E Harrell Jr f.harr...@vanderbilt.edu wrote: Ramon Diaz-Uriarte wrote

Re: [R] validate (rms package) using step instead of fastbw

Frank, let me make sure I understand: On Fri, Feb 12, 2010 at 5:57 PM, Frank E Harrell Jr f.harr...@vanderbilt.edu wrote: Ramon Diaz-Uriarte wrote: Dear Frank, Thanks a lot for your response. And apologies for the question, because the answer was obviously in the help

Re: [R] validate (rms package) using step instead of fastbw

-Uriarte wrote: Frank, let me make sure I understand: On Fri, Feb 12, 2010 at 5:57 PM, Frank E Harrell Jr f.harr...@vanderbilt.edu wrote: Ramon Diaz-Uriarte wrote: Dear Frank, Thanks a lot for your response. And apologies for the question, because the answer was obviously in the help

[R] multicore: defunct R processes left

05 svn rev50317 language R version.string R version 2.10.0 Patched (2009-11-05 r50317) -- Ramon Diaz-Uriarte Structural Biology and Biocomputing Programme Spanish National Cancer Centre (CNIO) http://ligarto.org/rdiaz Phone: +34-91-732-8000 ext. 3019

Re: [R] questions on the ff package

://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Ramon Diaz-Uriarte Structural Biology and Biocomputing Programme Spanish National Cancer Centre (CNIO) http

Re: [R] Best R text editors?

, self-contained, reproducible code. -- Ramon Diaz-Uriarte Structural Biology and Biocomputing Programme Spanish National Cancer Centre (CNIO) http://ligarto.org/rdiaz Phone: +34-91-732-8000 ext. 3019 __ R-help@r-project.org mailing list https

Re: [R] Problem with predict.coxph

and provide commented, minimal, self-contained, reproducible code. -- Ramon Diaz-Uriarte Structural Biology and Biocomputing Programme Spanish National Cancer Centre (CNIO) http://ligarto.org/rdiaz Phone: +34-91-732-8000 ext. 3019 __ R-help@r

Re: [R] DNAcopy package in R

, minimal, self-contained, reproducible code. -- Ramon Diaz-Uriarte Statistical Computing Team Structural Biology and Biocomputing Programme Spanish National Cancer Centre (CNIO) http://ligarto.org/rdiaz Phone: +34-91-732-8000 ext. 3019 __ R-help@r

Re: [R] running R-code outside of R

/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Ramon Diaz-Uriarte Statistical Computing Team Structural Biology and Biocomputing Programme Spanish National Cancer Centre

Re: [R] Programming Concepts and Philosophy

the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Ramon Diaz-Uriarte Statistical Computing Team Structural Biology and Biocomputing Programme Spanish National Cancer Centre (CNIO) http://ligarto.org/rdiaz Phone

Re: [R] How can I execute a .R/script file

]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Ramon Diaz-Uriarte Statistical Computing Team Structural

Re: [R] ADaCGH package crashes at mpiInit()

do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Ramon Diaz-Uriarte Statistical Computing Team Structural Biology and Biocomputing Programme Spanish National Cancer Centre (CNIO) http://ligarto.org/rdiaz

Re: [R] Calling C code from R...wrapping C structures

and provide commented, minimal, self-contained, reproducible code. -- Ramon Diaz-Uriarte Statistical Computing Team Structural Biology and Biocomputing Programme Spanish National Cancer Centre (CNIO) http://ligarto.org/rdiaz __ R-help@r-project.org

Re: [R] permutation test assumption?

. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Ramon Diaz-Uriarte

Re: [R] Conditionals for Errors or error flags

-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Ramon Diaz-Uriarte Statistical Computing Team Structural Biology and Biocomputing Programme Spanish National Cancer Centre (CNIO) http

Re: [R] Help with 'memory not mapped'

__ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Ramon Diaz-Uriarte Statistical Computing

Re: [R] Help with 'memory not mapped'

__ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Ramon Diaz-Uriarte

Re: [R] R_alloc with structures with flexible array members

Eddelbuettel [EMAIL PROTECTED] wrote: Hi Ramon, On 5 March 2008 at 22:00, Ramon Diaz-Uriarte wrote: | Yes, of course! You are right. What a silly mistake on my part! I was | using a standalone program for development of functions, debugging, | etc, of what is part of a package. That's

Re: [R] R_alloc with structures with flexible array members

Humm... but I mistakenly thought I was assuming almost nothing. R. On Wed, Mar 5, 2008 at 10:38 PM, Jeffrey Horner [EMAIL PROTECTED] wrote: Ramon Diaz-Uriarte wrote on 03/05/2008 03:00 PM: Dear Prof. Ripley, Yes, of course! You are right. What a silly mistake on my part! I

[R] R_alloc with structures with flexible array members

)); but both result in segmentation faults. Should I just keep using malloc (and free at end)? Thanks, R. -- Ramon Diaz-Uriarte Statistical Computing Team Structural Biology and Biocomputing Programme Spanish National Cancer Centre (CNIO) http://ligarto.org/rdiaz

Re: [R] R_alloc with structures with flexible array members

-I/usr/share/R/include -L/usr/lib/R/lib -lR ex7.c and the ./a.out segfaults when I use R_alloc (not with malloc). Best, R. On Wed, Mar 5, 2008 at 5:23 PM, Jeffrey Horner [EMAIL PROTECTED] wrote: Ramon Diaz-Uriarte wrote on 03/05/2008 04:25 AM: Dear All, In a package, I want to use

Re: [R] R_alloc with structures with flexible array members

2008, Ramon Diaz-Uriarte wrote: Dear Jeff, Thanks for the suggestion. However, something is still not working. This is a simple example: *** start C #include R.h struct Sequence { int len; unsigned int state_count

Re: [R] compress data on read, decompress on write

Thanks, Greg. Yes, I'd store the compressed stuff as a raw data type. Best, R. On Thu, Feb 28, 2008 at 11:54 PM, Gregory Warnes [EMAIL PROTECTED] wrote: You might look at storing the data using R's raw data type... -G On Feb 28, 2008, at 5:38PM , Ramon Diaz-Uriarte wrote: Dear

[R] using zlib (was compress data on read, decompress on write)

the compression. On Thu, 28 Feb 2008, Ramon Diaz-Uriarte wrote: Dear All, I'd like to be able to have R store (in a list component) a compressed data set, and then write it out uncompressed. gzcon and gzfile work in exactly the opposite direction. What would be a good way to handle

Re: [R] using zlib (was compress data on read, decompress on write)

Dear Prof. Ripley, Thanks for your reply. I think I understand now. Best, R. On Fri, Feb 29, 2008 at 7:36 PM, Prof Brian Ripley [EMAIL PROTECTED] wrote: On Fri, 29 Feb 2008, Ramon Diaz-Uriarte wrote: Dear All, I think I am confused about how I'd be able to use zlib starting

[R] compress data on read, decompress on write

readBin, etc, from R. But, if I can, I'd like to avoid our C code having to call zlib, etc, so as to make our package easily portable. Thanks, R. -- Ramon Diaz-Uriarte Statistical Computing Team Structural Biology and Biocomputing Programme Spanish National Cancer Centre (CNIO) http

Re: [R] compress data on read, decompress on write

, depending on the size and degree of sparseness of the matrix. -Christos -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Ramon Diaz-Uriarte Sent: Thursday, February 28, 2008 1:18 PM To: [EMAIL PROTECTED] Subject: [R] compress data on read

Re: [R] Any mountain clustering method in R?

]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Ramon Diaz-Uriarte Statistical

Re: [R] how to wait after plotting in BATCH mode?

mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Ramon Diaz-Uriarte Statistical Computing Team Structural Biology and Biocomputing

Re: [R] Normalizing data

mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Ramon Diaz-Uriarte Statistical Computing Team Structural Biology and Biocomputing

Re: [R] Linux editor for R+LaTeX, but not Emacs

. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Ramon Diaz-Uriarte Statistical