general question: I read the help to plotmath, but I still
didn't understand, how it works. Is there a good documentation, book,...
which explains all this stuff?
?plotmath suggests to use a comma separated list as in:
plot(1, main=expression(sm[list(w,grass)]))
Uwe Ligges
Thanks in advance
-help mailing list.
In invoking the function source(filename), it seems that the filename
has to exist in the current working directory, otherwise it has to be
specified in full path.
No: relative (to the working directory) specifications are possible as well.
Uwe Ligges
So is there any
the package in R studio. I use window 7.
... and this is a question for some R Studio mailing list.
Uwe Ligges
Thanks.
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yourself.
Uwe Ligges
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Works perfectly well with R-2.14.1 32-bit on a Windows device. Since you
have not followed the posting guide and forgot to give details about
your platform, there is not much we can do.
Uwe Ligges
On 22.12.2011 23:08, Karen Liu wrote:
When I use the image() function for a relatively small
LC_NUMERIC=C
[5] LC_TIME=C
attached base packages:
[1] tcltk tools stats graphics grDevices utils datasets
[8] methods base
other attached packages:
[1] parser_0.0-14Rcpp_0.9.9 debug_1.2.40 mvbutils_2.5.101
Best,
Uwe Ligges
On 22.12.2011 17:59, Enio Jelihovschi wrote
See
http://www.rforge.net/rJava/
and
http://www.rforge.net/JRI/
Uwe Ligges
On 29.12.2011 07:46, PermataRussiana wrote:
Dear All,
I am writing R code and I want to interface with JAVA using netbeans.
I want to call R from JAVA. What i should pick?rJAVA or JRI?
and can someone provide
-help message.
Uwe Ligges
here data is of 60 records and 10 attributes. V1,...V9 are input values and
V10 is response variable.
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This code is not reproducible, hence hard to know if there is a problem
with R, a contributed package, or what you wrote or did.
Best,
Uwe Ligges
On 28.12.2011 18:07, Ana wrote:
Hi guys,
Thansk for the help with the transparency.
I've made some modifications to my code , added rgb in colour
-varimax. Is
there a command to do this? scores(x) does not do it.
Yes, loadings().
Uwe Ligges
Thanks and happy holidays
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,
minimal, self-contained, reproducible code.
Uwe Ligges
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PLEASE do read the posting guide http://www.R-project.org/posting
process -- is this true?
Err, this depends on the platform and the way you are using R.
If you change some parts of R while that is running, it may result into
unexpected behaviour or a crash if R accesses the files after the
upgrade, of course.
Best wishes,
Uwe Ligges
I'd be grateful for any
;
See package SASmixed that includes some nice examples how to move from
SAS to R.
Uwe Ligges
But, I want use R. What would be the equivalent in R?
Thank you.
--
Silvano Cesar da Costa
Departamento de Estatística
Universidade Estadual de Londrina
Fone: 3371
On 24.12.2011 12:03, reena wrote:
It didn't work. :(
What did not work???
Please do not misuse the R-help mailing list! Its posting guide clearly
asks you to cite the thread and specify reproducible examples that make
other able to help.
Best,
Uwe Ligges
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you have statconnDCOM installed.
Uwe Ligges
I am able to load the com object as seen in screenshot
2.png. however I am unable to invoke/get/set property to the object.
Please guide me on the same,
Regards;
Kumar Anand
1.png
2.png
when log(x) is
undefined ...
Uwe Ligges
Please forgive the French; it is my study language. Quite frankly I don't
mind if I don't get the bonus marks, what is really important is that I
understand why it doesn't work and what condition is missing.
You're help would be kindly appreciated
, any
help from the list would be gratefully received.
Reason is that you need to specify fn and heq in a way that will accept
these arguments!
So the defitionions should start with
fn - function(x,RR,Diff)
and
heq - function(x,RR,Diff)
respectively.
Uwe Ligges
Regards
Mike
also tell on the list where
you took those functions from. qplot is not on base R graphics, hence
see the help page of the package you took that function from (assuming
ggplot2).
Uwe Ligges
Thank you!
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to the bugtraking system.
Uwe Ligges
Thanks for any advice!
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See methods(predict) and find that methods are hidden in the Namespaces
and are ought to be accessed by the generic. If you really want to
access it explicitly (which i not intended by design), see help(:::)
Your code is not reproducible, hence we cannot help in detail.
Uwe Ligges
more improved way
to do that?
Yes: you can also compare the whole column at once, but since there is
no example in your message, you probably don't expect a detailed answer.
Best,
Uwe Ligges
B.R
Alex
[[alternative HTML version deleted
See FAQ How can I save the result of each iteration in a loop into a
separate file?
you will certainly find the the principle given therein can be applied
the other way round or reading as well.
Uwe Ligges
On 21.12.2011 02:32, Debs Majumdar wrote:
Hi,
I have a list of files in one of my
On 21.12.2011 14:25, David Winsemius wrote:
There are no restrictions needed. Any of your staff can view the (open)
source code just as any other member of the human race
I do not think the GPL excludes other species ...
with access to to
an Interenet connection may do so.
Oh, you may
neat!) is:
myVec- c(1,2,3)
eg- expand.grid(myVec, myVec)
eg[eg[,1]= eg[,2],]
Var1 Var2
111
412
522
713
823
933
What am I missing?
You are just using a different order - sort accoriding to Var1...
Best,
Uwe Ligges
Best regards,
KJ
Jeff
On 20.12.2011 06:47, Vikram Bahure wrote:
Dear R users,
I am getting following error while using boot.ci. I have int.inc function
with 2 values. I am generating CI for the sample estimate.
*med- function(x,i) median(x[i])*
*b1- boot(int.inc,med,2)*
*ci.out- boot.ci(b1,conf =
(channel, cat(txt,\n),errors=TRUE,)
sqlQuery(channel, txt, errors=TRUE)
seems more plausible (since cat returns NULL).
Uwe Ligges
close(channel)
However, I get the following error immediately after sqlQuery command:
Error in odbcQuery(channel, query, rows_at_time) :
'getCharCE' must
.
Uwe ligges
-Original Message-
From: Uwe Ligges [mailto:lig...@statistik.tu-dortmund.de]
Sent: Tuesday, December 20, 2011 8:46 AM
To: Mike Pfeiff
Cc: 'r-help@r-project.org'
Subject: Re: [R] RODBC Error: 'getCharCE' must be called on a CHARSXP
On 20.12.2011 14:55, Mike Pfeiff wrote
is derived from.
cat() shows the actual version (but does not return) it.
Uwe Ligges
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PLEASE do read the posting guide http
On 19.12.2011 13:30, Ronaldo Reis Júnior wrote:
Em 18-12-2011 18:55, Rolf Turner escreveu:
On 19/12/11 04:29, Uwe Ligges wrote:
On 18.12.2011 12:58, Ronaldo Reis Júnior wrote:
SNIP
Why the write.xls dont find the object a inside a function?
Because at least that part of the function
On 17.12.2011 20:51, John C Nash wrote:
As I'm working with some folk who use Windows to prepare an article /
documentation, I'd
like to be able to know if we can use odfWeave. It seems there is no official
binary at
the moment for Windows.
Right, reason is the package does not pass the
Please report (if you want to speed things up including a patch) to the
package maintainer. This package currently does not pass the check under
Windows (at least not in non UTF-8 locales).
Best,
Uwe Ligges
On 17.12.2011 23:49, Frank Lawrence wrote:
I am new to using odfWeave but I have
not in non UTF-8 locales).
Best,
Uwe Ligges
On 16.12.2011 17:11, Frank Lawrence wrote:
I am new to using odfWeave but I have encountered a problem running both
the example in the help file as well as another file. I am not sure how to
correct the error.
First example:
library(odfWeave
(A=c(1,2),B=c(10,11))
+ write.xls(a,file=a.xls)
+ }
test()
Erro em get(s[i]) : objeto 'a' não encontrado
Why the write.xls dont find the object a inside a function?
Because at least that part of the function is poorly written.
Uwe Ligges
Thanks
Ronaldo
, if there an alternative way to get the samples.
Short answer: No.
Long answer: Well, samplesHistory(..., plot=FALSE) may be more
convenient for several parameters at once, but it uses samplesSample
internally, that means: no.
Best,
Uwe Ligges
openbugs() mentioned by you seems to be from R2WinBUGS
$), function(x)
read.csv(x)[1,2])
Uwe Ligges
2011/12/14 Trying To learn againtryingtolearnag...@gmail.com
Hi all,
I have 100 csv files always with this information (I Attach two example
excels)
KT80.csv contains:
,x
1,127.188271604938
KT80.csv contains
,x
1,1.06329287351545
I
: (could not connect to dbname:
unable to open database file
Any ideas why?
At least according to the documentation the first argument for that
function should be a Directory in which all CuffDiff output files can
be located.
Uwe Ligges
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, B. D. (2002) Time series in R 1.5.0. R News, 2/2,
2–7. [2]http://www.r-project.org/doc/Rnews/Rnews_2002-2.pdf
Anyone know who I should tell about this?
Thanks for the report, has been fixed by Brian Ripley already.
Uwe Ligges
Thanks!
- Jan
References
1. http://www.r-project.org/doc
to a new R-x.y+1.z* release.
update.packages(checkBuilt=TRUE) does that for CRAN and BioC (if a BioC
repository / mirror is chosen) packages.
Uwe Ligges
Regards
Petr
Thanks
Ronaldo
--
6Ş lei - Sua produtividade varia como
(tempo produtivo gasto por dia)^1.000.
7Ş lei - Sua
with such a functionality?
Those rules are implicitly stored in the object that is returned by
svm() and they can be applied using predict(). A nice output and
particularly an interpretation of the estimates is much harder and I
don't know about such functionality.
Uwe Ligges
Thanks in advance,
Paul
On 15.12.2011 04:09, Xu Wang wrote:
I am still interested in this. Is there no way to pay directly online? via
paypal or other?
No.
Uwe Ligges
Thanks,
Xu
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be re-installed
That means you have a JavaGD installation in one of your libraries that
has been installed with R 2.14.0 but you are trying to use it with R
= 2.14.0.
Uwe Ligges
I tried re-installing and got the same result. (rJava, by the way,
seems to load OK.)
I can't find any
.
Uwe Ligges
Thank,
Judit
-Original Message-
From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On
Behalf Of Thomas Adams
Sent: Monday, December 12, 2011 3:22 PM
To: Bert Gunter
Cc: r-help@r-project.org
Subject: Re: [R] Boxplot of multiple vectors with different
On Tue, Dec 13, 2011 at 4:08 AM, David Winsemiusdwinsem...@comcast.netwrote:
On Dec 12, 2011, at 3:51 PM, Uwe Ligges wrote:
1. The formula you used is not for a logistic but an ordinal regression
(since you are using the default gaussian family rather than
family=binomial
Probably some division by zero is done somewhere internally. We cannot
say more since this is not reproducible for us.
Uwe LIgges
On 13.12.2011 18:29, niki wrote:
Dear all,
I have a datafile where I run haplo.GLM analyses using several variables (a
matrix). However, when I include
Please post only once!
Uwe Ligges
On 12.12.2011 20:32, Tony Stocker wrote:
Hello,
I am dealing with data stored in a database as a 'time' object. I
export the data from the database to a text file and utilize the
'time_to_sec()' function of the database to convert the human readable
time
)
Uwe Ligges
Thanks,
Tony
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code
/same question is what does it mean to set the first level as
the base does this mean it turns each value into a unique binary
result?
What is a unique binary result?
Actually, the base level is inlcuded in the intercept of your model and
you see the differences for the other levels.
Uwe Ligges
defined in
such a case as you found out already. R will give a warning in that
case, that the Fisher Scoring does not converge.
LDA will give perfect results in such a case (well, unless the within
class covariance matrix is singular).
Best,
Uwe Ligges
On 12.12.2011 11:46, wim nursal wrote
of ‘...’ when runnign R CMD Rd2pdf on some Rd files with
R-release.
Best,
Uwe Ligges
Best regards,
Johannes
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),
by=100)))
Uwe Ligges
Thanks again,
--Kelly V.
From: David Winsemius [dwinsem...@comcast.net]
Sent: Friday, December 09, 2011 11:14 AM
To: Vining, Kelly
Cc: r-help@r-project.org
Subject: Re: [R] scatterplot to boxplot translation?
On Dec 9, 2011, at 2:11
Works for me: Do you have the most recent Jags version? Is this 32-bit
or 64-bit R?
Uwe Ligges
On 08.12.2011 11:42, Filipe Ferminiano Rodrigues wrote:
Hi.
I was trying to follow this rjags tutorial (example 1):
http://www.johnmyleswhite.com/notebook/2010/08/20/using-jags-in-r-with-the-rjags
Never ever cross post!!!
On 08.12.2011 14:51, MATEMATIK ISTATISTIK wrote:
Dear all,
I am sorry , I have not enough English or I am fool to understand the
helping system
1- if someone has written the code for Hannan-Rissanen model selection in
ARMA models,
how can I find this R module or the
' was built under R version 2.14.0
Error: package/namespace load failed for 'arules'
Install an arules binary that was built for your version of R (reather
than a later one) or install from sources.
Uwe Ligges
The arules CRAN page says: Depends: R (≥ 2.11.0), stats, methods, Matrix (≥
0.999375
: ask on the right mailing list or the support staff.
Best,
Uwe Ligges
Thanks a lot!
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-read.csv(c,header=T)
hist(sector$exports,xlab=exports (MtCO2),main=CO2 Exports)
Err, you either want SouthAfrica$sector or SouthAfrica$exports.
Uwe Ligges
Error in hist(sector$exports, xlab = exports (MtCO2), main = CO2 Exports) :
object 'sector' not found
Could somebody please assist
.
Uwe Ligges
hist(X, freq = F, col = 'gray', axes = FALSE)
abline(v = cyano_euk_min, col = 'red', lty = 3, lw = 2)
abline(v = cyano_euk_max, col = 'red', lty = 3, lw = 2)
axis(1, tck = -0.02)
axis(2, tck = -0.02)
box(bty = 'l')
Regards,
Phil
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-dimension and rows for y-dimension.
Is there way to use rows as X and columns as Y?
Are you looking for ?t
Uwe Ligges
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need the axis line)?
Thank you for all the help you guys provide, it is extremely useful!
par(lwd=0.5)
boxplot(1:10, lwd=0.5)
Uwe Ligges
Regards
Simon Gingins
PhD student
University of Neuchâtel
Institute of Biology
Department of Behavioural Ecology
Rue Emile-Argand 11
2000 Neuchâtel
to be able to reference such as:
meas- data$col
meas - data[[col]]
Uwe Ligges
and use this meas in the function.
However, I can't seem to get this to work because the input is read into a
string, and I can't figure out how to convert this string to the vector
name that I want.
Any help
On 07.12.2011 18:52, Michael Friendly wrote:
In a variety of graphic applications, I plot some data, together with
arrows representing variables
or linear transformations of variables as vectors in the same space, as
in a biplot.
In my applications, the scale of the arrows is arbitrary -- all
On 06.12.2011 13:46, Johannes Radinger wrote:
Hi,
thank you... I think I will go for the if-stop approach
as the stop() stops the total function... So there is just
one little other question: What is the opposite of is.numeric?
Is ther isnot.numeric?
Yes, see:
?!
Uwe Ligges
How can
###
library(lars, lib.loc = ~/R/x86_64-redhat-linux-gnu-library/2.11)
Are you sure it is installed at the location you specified?
Uwe Ligges
Error : .onLoad failed in loadNamespace() for 'lars', details:
call: cat(Loaded lars, utils::installed.packages()[lars, Version],
error: subscript out
or is constant.
Uwe Ligges
My code and output is as follows:
sad-matrix(1,ncol=11,nrow=486)
sad[,c(1:10)]-d[,2][-357]
sad[,1]-d[,29][-357]
sad[,2][sad[,2]!=1]-0
sad[,3][sad[,3]!=2]-0
sad[,4][sad[,4]!=3]-0
sad[,5][sad[,5]!=4]-0
sad[,6][sad[,6]!=5]-0
sad[,7][sad[,7]!=6]-0
sad[,8][sad[,8]!=7]-0
sad[,9
).
How could I possibly go about this, let me know. Any help will be greatly
appreciated.
Thanks in advance for your help,JN
Sounds like homework?!
Anyway, see ?par and ?axis to answer your question directly or ?boxplot
more implicitly...
Best,
Uwe Ligges
are using some package and call the subroutine within the
NAMESPACE of the package rather than the one in .GlobalEnv.
Uwe Ligges
Please help me!
Thanks!
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PLEASE do read
library using .libPaths() before loading the package.
Uwe Ligges
Error: package/namespace load failed for ‘lars’
It is the first time I get such an error message when trying to load a package.
It would seem that the problem is with
###
cat(Loaded lars, utils::installed.packages()[lars
that are involved.
best,
uwe Ligges
2011/12/6 Uwe Liggeslig...@statistik.tu-dortmund.de
On 06.12.2011 18:29, Michael wrote:
how do I check and make sure? thx
E.g. insert cat(Hello World!\n) in the first line of your function you
called subroutine.
Best,
Uwe Ligges
On 12/6/11, Uwe
want to create a list of objects that you return in the end.
Uwe Ligges
I need it to return ten variables: x_1, x_2, ..., x_10
How can I do it?
Thank you very much!
Beatriz
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Sent from
is in a data.frame called dat):
wx - which(dat$x==1)
result - lapply(wx[wx 3], function(x) dat$y[x - (1:3)])
(where lapply is a loop, implicitly).
Uwe Ligges
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PLEASE
On 04.12.2011 14:38, Kang Min wrote:
Hi all,
I have a numeric vector with 1 decimal place, and I'd like to extract
the last 3 characters, including the decimal point. The vector ranges
from 0 to 20.
x- round(runif(100)*20, digits=1)
formatC(round(x%%10, 1), format=f, digits=1)
Uwe Ligges
to get the memory consumption of objects.
Uwe Ligges
On 02.12.2011 16:17, Marc Jekel wrote:
Dear R community,
I am still struggling a bit on how R does memory allocation and how to
optimize my code to minimize working memory load. Simon (thanks!) and
others gave me a hint to use the command
/142642881436450816/photo/1 - (if
you click on the picture it opens a larger version so it is easier to see
the problem) is there anyway I can get R to not cut the top off the letters?
Increase the margins. See ?par and its mar argument.
Uwe Ligges
Thanks,
Rob
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the Solaris based CRAN checks.
Hence please report to the package maintainer directly, since reports
from CRAN maintainers and the CRAN results are obviously ignored.
Best,
Uwe Ligges
roger
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of references in the book!
Does anybody know if there are errata for the book available some place?
I'd ask the author!
Uwe Ligges
Thanks,
Ravi
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Sent from the R
saved objects smaller,
I'm open for suggestions.
Look carefully for environments attached to one or more of the objects.
Best,
Uwe Ligges
As an initial step, what is the result of running ls() with your RData
file loaded? You should get a list of what is in memory. Using RData
files can
On 29.11.2011 07:06, Indrajit Sengupta wrote:
What have you tried so far - can you explain? fitdistrplus package is the
default package for fitting distributions.
It is a contributed packages, and perhaps it is a good one (I do not
know), but calling it the *default* ... who defined that?
Best,
Uwe
- as.integer(Cheque)
Uwe Ligges
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https
-
within(d, a - as.integer(a))})
Uwe Ligges
-- Bert
2011/11/30 Uwe Liggeslig...@statistik.tu-dortmund.de:
On 30.11.2011 09:16, arunkumar wrote:
hi
I have data like this in a dataframe
Var Value Cheque
X140FALSE
X220FALSE
X328TRUE
I want to replace it FLASE
On 29.11.2011 13:15, R. Michael Weylandt wrote:
I think you are looking for the system() command.
... and you certainly do not want to use savePlot but rather use the
pdf() device directly.
Uwe Ligges
Michael
On Tue, Nov 29, 2011 at 7:11 AM, Christof Klußckl...@email.uni-kiel.de
that?
Best,
Uwe Ligges
Regards,
Indrajit
From: rch4r...@geneseo.edu
To: r-help@r-project.org
Sent: Tuesday, November 29, 2011 8:39 AM
Subject: [R] Negative exponential fit
We need help
We are doing a project for a statistical class in and we are looking
example(heatmap.2) works for me, hence it is either your data, your
version of some package or your version of R that causes the problems,
we do not have information of any of these although the posting guide
asks you to provide this for each posting. So we cannot help.
Uwe Ligges
from above link.I am new to R.
Well, the R Installation and Administration manual says it.
Easiest: Either install.packages(bayesQR) downloads and installs
automatically, or for Windows, simply use the GUI to install the
downloaded zip file.
Uwe Ligges
So please tell me what is the next
in a textbook and find why you
cannot calculate it for this kind of data. If you do not find, please
ask a local statistician for help.
Uwe Ligges
Sorry but I don't have a clue and I hope there is an easy way to solve my
problem.
Thanks a lot for all answers.
Greetz Geo
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)),
horiz = FALSE, pt.bg = c('gray', 'black'), cex = 0.75,
bg = 'white')
Best,
Uwe Ligges
Regards,
Phil
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can share more if you
think it will help
Actually, the posting guide asks you to provide commented, *minimal*,
self-contained, reproducible code.
Uwe Ligges
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Sent
of memory limit
I do not know if any OS / window manager has the capability to open that
many numbers of windows. But as I said, we need some difintions and
examples.
Uwe Ligges
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definition of window.
so... it may be reaching some sort of memory limit
I do not know if any OS / window manager has the capability to open that
many numbers of windows. But as I said, we need some difintions and
examples.
Uwe Ligges
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you want to make it available
without having any need to use it?
Uwe Ligges
line in the DESCRIPTION file to tell it to install Matrix at install
time but not load it automatically at package load time -- the package
would have to require it itself. (sqldf has this problem since most
)[1], par(usr)[3],
par(usr)[2], par(usr)[4], col=grey80)
)
Best,
Uwe Ligges
Maybe someone knows how to do that and can give some hints...
/Johannes
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.
It does not ask you to reinstall *r*Java but to reinstall Java.
Have you done that? So which architecture is your running R version and
which architecture is your Java version?
Best,
Uwe Ligges
Any advice would be much appreciated: I can now not use glmulti at all and I
can't see how
and calling directly
Matrix::rowSums explicitly and so on should work. And exactly this is
what Namespaces are made for: deal appropriately with name clashes by
importing into the own namespace.
Best,
Uwe Ligges
Gabor
On Tue, Nov 22, 2011 at 8:09 PM, Gábor Csárdicsa...@rmki.kfki.hu wrote:
Dear
the latter and repost appropriately afterwards.
Uwe Ligges
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self
=~arma(0,0),formula.var=~igarch(1,1),series=gs,include.var=F)
What is garchoxfit_R.txt? WHat is garchOxFit()? What is F? What is gs?
You mean a character vector containg the path of your working directory
as you got from getwd()? I cannot believe that.
Uwe Ligges
Error in garchOxFit
)),
horiz = FALSE, pt.bg = c('gray', 'black'), cex = 0.75,
bg = 'white')
Uwe Ligges
But its not working.
Any help would be appreciated.
Regards,
Phil
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will use anyway.
Best,
Uwe Ligges
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained
,family='Times',horizontal=FALSE)
...
dev.off()
around the line above in order to create an eps file, the bar is much too wide.
Which bar? We cannot see it since your code is not reproducible.
Best,
Uwe Ligges
I tried to play around the witdh parameter of the postscript
command and tried
(cbind(Retail, QSlod) ~ BrandName, data=dat, sum)
Uwe Ligges
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=Sender, ylab=V/m)
Now I want to scale the y-axis logarithmically, i.e. 0.01; 0.1; 1; 10. How can
I do this?
I think you will have to tweak the underlying code. A feature request to
the authors may help, a patch that adds the requested feature may help
even more.
Best,
Uwe Ligges
Thank
the requested feature may help
even more.
Best,
Uwe Ligges
Thank you very much
Alex
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
of singular matrix in composition package
I guess the matrix is not provided by the package but caused by the data
*you* provided. So try to find out why the matrix is singular and the it
is much easier to tackle it.
Uwe Ligges
thanks in advance
ros
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