Dear R users,
I am struggling to fit expo-linear equation to my data using nls
function. I am always getting error message as i highlighted below in yellow
color:
Theexpo-linear equation which i am interested to fit my data:
response_variable = (c/r)*log(1+exp(r*(Day-tt))), where
Dear R users,
I am struggling to fit expo-linear equation to my data using nls
function. I am always getting error message as i highlighted below in yellow
color:
### Theexpo-linear equation which i am interested to fit my data:
response_variable = (c/r)*log(1+exp(r*(Day-tt))),
Dear R users,
I am struggling to fit expo-linear equation to my data using nls
function. I am always getting error message as i highlighted below in yellow
color:
### Theexpo-linear equation which i am interested to fit my data:
response_variable = (c/r)*log(1+exp(r*(Day-tt))), where
Dear Michael,
Thank you very much.
Ram
From: R. Michael Weylandt michael.weyla...@gmail.com
Sent: Wednesday, November 16, 2011 1:48 PM
Subject: Re: [R] Conversion of symmetry matrix into a vector ONE MORE QUESTION
Try the as.dist() function -- it won't
Dear R users,
I am not good in R-language programming. So, i need your help.
I want to convert my lower-triangle value of symmetry matrix into a vector with
their row and column name.
I found a function called sm2vec in corpcor package but it give only a
vector of values but not row and column
Dear R users,
I am trying to use wgaim package for QTL analysis using mixed model approach.
But i am stuck with asreml function while using wgaim package.
Do i need a separate package to activate asreml function beside wgaim
package ?
If so, i tried to download Asreml-R package (i guess this
Dear Uwe Ligges,
Thanks for your prompt response.
I visited website link that you mentioned. It seems it needs license though it
is R package.
Am i correct ?
Thanks
Regards,
Ram Kumar Basnet
From: Uwe Ligges lig...@statistik.tu-dortmund.de
To: ram basnet basnet...@yahoo.com
Cc: R help
Dear Uwe Ligges,
Thanks for response.
I mean this R package is not free package.
Thanks
Ram Kumar Basnet
From: Uwe Ligges lig...@statistik.tu-dortmund.de
To: ram basnet basnet...@yahoo.com
Cc: R help r-help@r-project.org
Sent: Friday, August 12, 2011 7:28 PM
Subject: Re: [R] problem
Dear R users,
It may be very simple but it is being difficult for me.
I have two vectors with some common string. And, i want to combine into a
vector in such a way that it includes string from both vectors and make a
unique.
For example:
x - paste(rep(A,5),1:5,sep = .)
x
[1] A.1 A.2 A.3
:
From: Bert Gunter gunter.ber...@gene.com
Subject: RE: [R] selecting significant predictors from ANOVA result
To: 'ram basnet' basnet...@yahoo.com, 'R help' r-help@r-project.org
Date: Wednesday, January 27, 2010, 7:56 AM
Ram:
You do not say how many cases (rows in your dataset) you have, but I
Dear all,
I did ANOVA for many response variables (Var1, Var2, Var75000), and i got
the result of p-value like below. Now, I want to select those predictors, which
have pvalue less than or equal to 0.05 for each response variable. For example,
X1, X2, X3, X4, X5 and X6 in case of Var1,
Dear all,
Does some body have idea on how to extract Type III sum of Square from lm or
aov function in R ? I could not figure out it.
If this is minor and irrelevant to post in this mail, I am sorry for that.
Thanks.
Sincerely,
Ram Kumar Basnet
Wageningen University,
Netherlands
Dear all,
I have querry on how to extract the data by matching between two data set where
one has the same elements multiple times?
For example, I have two matrix X and Y.
X
[,1] [,2] [,3]
1 A 5 P
2 B 6 P
3 C 7 P
4 D 5 Q
5 E
Dear R users,
Does somebody know the way to import many files by a single command in R ? I
have 50 files in a directory and now, i am importing the files repeatedly (one
by one). If there is a way to import all files at a time, it makes much more
easy and save times too.
Thanks in advance.
Dear R users,
Does Elasticnet (package elasticnet) handle the missing value in predictors
? If some one can provide the way to hadle missing value, it will great.
Thanks in advance.
Sincerely,
Ram Kumar Basnet
Wageningen University,
The Netherlands
[[alternative HTML
Dear R users,
I am new user for elastic net. I am trying to use elasticnet library.
I have marker data with 359 markers and 168 samples, and response is
metabolites. I am trying to do regression between a metabolite and markers.
But i am getting the following error:
Dear R users,
I am new user for elastic net. I am trying to use elasticnet
library.
I have marker data with 359 markers and 168
samples, and response is metabolites. I am trying to do regression between
a metabolite and markers.
But i am getting the following error:
Dear all,
I was using older version of R (installed early). I install new version of R
(R.2.9.0) but i could not find package xlsReadWrite to read Excel file. Is
there any alternatives to read Excel file ?
I hope it should be.
I need help although it is minor querry.
Thanks in advance.
Dear all,
I am trying to make barplot from matrix with beside=FALSE. I have 165 labels
in my bar plot. When i plot the label horizontally below the barplot, then all
labels are not appear in the plot due to lack of space. I used the following
function:
barplot(t(bar), main=Barplot based on
Dear all,
I am facing the same problem. I followed the all instructions given in help
file and some steps of previous discussion (from google search) but I could not
install package Rgraphiviz in windows. I tried even the instructions given to
install Bioconductor package then only able to
Hi R users,
I want to calculate the partial correlation (first or second order) and their
corresponding significance test (p-value).
I used
library(corpcor)
and cor2pcor function to calculate partial correlation but could not
calculate p-value.
If some one knows the R package or function to
Dear R users,
I am not so used to this R software. I have to use the package Rgraphviz but
found some problem in the installation process. I download this package and
store in R library but i am not getting this package in R installation list.
I made review in google search net and use the
Dear R users,
I am using RandomForest package. While using this package, i got
Error: cannot allocate vector of size 117.3 Mb
.message.
I had this problem earlier too but could not manage. Is there any way to solve
this problem or to increase vector size ? My data set
3 6
Now, i want to extract data of matching observataions between two subsets (i.e.
1,2,3,6) and make a new subset.
If some body has idea, then it will be great for me.
Thanks in advanced.
Ram Basnet.
[[alternative HTML version deleted
Dear R users,
I am new user of R as well as Biclust package. I am handling data set of (236
genes and 166 conditions) and i knew the importance of Biclustering. Now, I am
able to get some results but can not understand the result as what i am
thinking. My thinking may be wrong.
I used
Hi R users,
I am trying to do two-way clustering (using information of both observation and
variables). Is there any package available in R.
Another querry, if somebody can provide related information (website) regarding
this statistics, it will be great.
Thanks in advance.
Regards,
Ram
Hi R users,
I am doing multiscale bootstrapping for clustering through pvclust package. I
have large data set (observations 182 and variables 5546). When i tried to make
bootstrapping, then i got message as Bootstrap (r = 0.5)Error:
cannot allocate vector of size 117.3 Mb.
I am
Hi
I think this may be simple task but creating trouble to me.
In my calculation, i have got large number of rows (5546) and column 182 but i
am not able to see all the rows. May be somebody have idea how i can see all
the rows ? I will be greatful if any body help me.
Thanks in advance
-help@r-project.org
Date: Tuesday, September 2, 2008, 9:43 AM
On 9/2/2008 12:30 PM, ram basnet wrote:
Hi
I think this may be simple task but creating trouble to me.
In my calculation, i have got large number of rows (5546) and column 182
but i am not able to see all the rows. May be somebody
Hi
I am a new user of R, and doing clustering analysis (dendrogram). I am quite
interested in pvclust package because of facility of AU probability of each
cluster.
Now, i have a problem when handling large data set. I have data set of 183 rows
and 5546 columns, and interested to make
30 matches
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