Re: [R] R_LIBS_USER not in libPaths

2017-09-16 Thread Martin Morgan
On 09/16/2017 11:29 AM, Rene J Suarez-Soto wrote: I have not intentionally set R_LIBS_USER. I looked for an Renviron.site file but did not see it in R/etc or my home directory. The strange part is that if I print Sud.getenv I see a value for R_LIBS_USER. However, this directory is not showing

Re: [R] R_LIBS_USER not in libPaths

2017-09-16 Thread Jeff Newmiller
These environment variables are _inputs_ to the R startup sequence, and optional ones at that. If you don't set them then R makes default settings. Read the R Installation and Administration manual that comes with R for more information. You also need to understand the scope of environment

Re: [R] R_LIBS_USER not in libPaths

2017-09-16 Thread Michael Dewey
Dear Rene I am not sure I understand your problem so this may be completely uselss but when I am going to run R from the command line I first of all run a little batch file. set R_HOME=C:\Users\Michael\Documents\bin\R\R-3.4.1 set R_PATH=%R_HOME%\bin\x64 set PATH=%R_PATH%;%PATH% Someone

Re: [R] R_LIBS_USER not in libPaths

2017-09-16 Thread Rene J Suarez-Soto
I have not intentionally set R_LIBS_USER. I looked for an Renviron.site file but did not see it in R/etc or my home directory. The strange part is that if I print Sud.getenv I see a value for R_LIBS_USER. However, this directory is not showing under libPaths. I though .libPaths should contain

Re: [R] R_LIBS_USER not in libPaths

2017-09-16 Thread Henrik Bengtsson
I'm not sure I follow what.the problem is. Are you trying to set R_LIBS_USER but R does not acknowledge it, or do you observe something in R that you didn't expect to be there and you are trying to figure out why that is / where that happens? Henrik On Sep 16, 2017 07:10, "Rene J Suarez-Soto"

[R] R_LIBS_USER not in libPaths

2017-09-16 Thread Rene J Suarez-Soto
I have a computer where R_LIBS_USER is not found in libPaths. This is for Windows (x64). I ran R from the command line, RGui and RStudio and I get the same results. I also ran R --vanilla and I still get the discrepancy. The only thing I found interesting was that I also ran SET from the command