Re: [R] Postscript graphs

2010-01-26 Thread Gavin Simpson
On Mon, 2010-01-25 at 14:05 -0800, Lu Wang wrote: Hi, I tried to use the following commands to create a postscript pie chart using R: postscript(file=H:/piechart.eps) # then I wrote my commands to generate the pie chart pie(filename,labels=,col=,radius=0.6) dev.off() After I ran

Re: [R] R2WinBUGS/ trap

2010-01-26 Thread Bob O'Hara
2010/1/26 Ben Bolker bol...@ufl.edu julien martin julemartin0320 at gmail.com writes: I am generating 1000 replicate data sets in R, each data set is then analyzed with WinBUGS in batch mode using R2WinBUGS. Unfortunately, occasionally some data sets lead WinBUGS to open a trap window;

Re: [R] Help

2010-01-26 Thread Kanak Choudhury
Dear All I have data as follows. D TM L 0.20 1 03 141 0.321 07 62 0.50 1 05 49 0.80 1 04 46 0.20 2 14 130 0.322 17 52 0.50 2 13 41 0.80 2 14

Re: [R] StructTS hang?

2010-01-26 Thread Uwe Ligges
On 25.01.2010 11:03, richard.kie...@rwe.com wrote: Hi! You have probably sorted out your problem a different way. However I have tried dealing with the same problem for a while and writing down the reason for this here may be of use to someone. In some other help-mail I read that time

Re: [R] question on sqldf syntax

2010-01-26 Thread Christian Schulz
Maybe that's a problem with the RSQLite package , probably detaching the package help. detach(package:RSQLite) HTH, Christian trying to structure sql to merge two datasets. structure follows: dbs.possible.combos (all possible combinations of dates and places) Date Place 1/1/10 N-01 1/1/10

Re: [R] R Output and ArcGIS

2010-01-26 Thread Steve Murray
Dear all, Thanks for the replies so far. Just to emphasise, I'm not using Excel in any way. I have many many files to output, so it'd take considerable time to export from R, reprocess in Excel, then load into Arc! On a PC I'm able to go directly from R to ArcMap (9.3) without having to go

Re: [R] StructTS hang?

2010-01-26 Thread Richard.Kiefer
No problem! Working: z-ts(sin(1:1000), start=1, freq=10) x-StructTS(z, type='BSM') Hang: z-ts(sin(1:1000), start=1, freq=100) x-StructTS(z, type='BSM') (Both on WinXP, R 2.9.2) I don't, however, know who the package maintainer is, nor can I track down where exactly the hang is caused. Maybe

Re: [R] Same y-axis on multiple plots?

2010-01-26 Thread Jim Lemon
On 01/26/2010 01:52 AM, Andreas Bergstrøm wrote: Greetings, I am attempting to use R throug PL/R in PostgreSQL to make several graphs (they show usage over time for radiochannels). However, as some never go above 100 in a 24 hour period, and others go well over 500, they get different y-axis

[R] [Fwd: Re: question on sqldf syntax]

2010-01-26 Thread Christian Schulz
Sorry mistake from me. This was another problem in my mind , but with RMySQL. Christian library(RMySQL) library(sqldf) sqldf(Select * from mtcars) Fehler in mysqlNewConnection(drv, ...) : RS-DBI driver: (Failed to connect to database: Error: Access denied for user 'user'@'localhost' (using

Re: [R] StructTS hang?

2010-01-26 Thread Uwe Ligges
On 26.01.2010 10:55, richard.kie...@rwe.com wrote: No problem! Working: z-ts(sin(1:1000), start=1, freq=10) x-StructTS(z, type='BSM') Hang: z-ts(sin(1:1000), start=1, freq=100) x-StructTS(z, type='BSM') (Both on WinXP, R 2.9.2) I don't, however, know who the package maintainer is, nor can I

Re: [R] R Output and ArcGIS

2010-01-26 Thread Rainer M Krug
On Tue, Jan 26, 2010 at 11:42 AM, Steve Murray smurray...@hotmail.comwrote: Dear all, Thanks for the replies so far. Just to emphasise, I'm not using Excel in any way. I have many many files to output, so it'd take considerable time to export from R, reprocess in Excel, then load into

Re: [R] Data Manipulation

2010-01-26 Thread Peter Rote
I still struggling with this: error massage: by(AlexETF,AlexETF$Industry,function(a) {filename = paste(C:/ab/,gsub( ,,a$Industry[1]),.txt,sep=) + print(filename) + write.table(a[,3,drop=FALSE],quote=FALSE,col.names=FALSE,row.names=FALSE) + } + ) [1]

Re: [R] Same y-axis on multiple plots?

2010-01-26 Thread Andreas Bergstrøm
On 26. jan. 2010, at 11:07, Jim Lemon wrote: On 01/26/2010 01:52 AM, Andreas Bergstrøm wrote: Hi Andreas, I didn't see an answer to your question, so I'll suggest that you take these warnings seriously: Warning messages: 1: In plot.window(...) : ylim.max is not a graphical parameter 2:

Re: [R] R-forge getting the wrong package

2010-01-26 Thread Barry Rowlingson
On Sun, Jan 24, 2010 at 10:09 AM, Barry Rowlingson b.rowling...@lancaster.ac.uk wrote: After accusing someone of typing 'install.packages(weather)' instead of 'install.packages(webmaps)', I discovered that R-forge really is currently returning the wrong source tarball for packages after

Re: [R] Data Manipulation

2010-01-26 Thread Peter Dalgaard
Peter Rote wrote: I still struggling with this: error massage: by(AlexETF,AlexETF$Industry,function(a) {filename = paste(C:/ab/,gsub( ,,a$Industry[1]),.txt,sep=) + print(filename) + write.table(a[,3,drop=FALSE],quote=FALSE,col.names=FALSE,row.names=FALSE) + } + )

Re: [R] Data Manipulation

2010-01-26 Thread Jim Lemon
On 01/26/2010 09:15 PM, Peter Rote wrote: I still struggling with this: error massage: by(AlexETF,AlexETF$Industry,function(a) {filename = paste(C:/ab/,gsub( ,,a$Industry[1]),.txt,sep=) + print(filename) + write.table(a[,3,drop=FALSE],quote=FALSE,col.names=FALSE,row.names=FALSE)

Re: [R] Two == expressions in bquote

2010-01-26 Thread Henrique Dallazuanna
You are rigth Bert. Thanks for the clarification. On Mon, Jan 25, 2010 at 7:00 PM, Bert Gunter gunter.ber...@gene.com wrote: I think that careful examination will show that Henrique's solution is not quite right: the text '=' character is slightly different than the symbol font character.

Re: [R] StructTS hang?

2010-01-26 Thread Richard.Kiefer
Exponential, you say? Maybe I am just not patient enough. After being unresponsive for several minutes, which in the larger examples that I work with has probably appeared like a hang, the code I just mentioned has given a result (a convergence error, but still). So, I must say I can no longer

[R] AIC for comparing GLM(M) with (GAM(M)

2010-01-26 Thread Andrea Meyer
Hello I'm analyzing a dichotomous dependent variable (dv) with more than 100 measurements (within-subjects variable: hours24) per subject and more than 100 subjects. The high number of measurements allows me to model more complex temporal trends. I would like to compare different models

[R] Formatting cgroup and factor level labels in Hmisc latex function

2010-01-26 Thread Stefan Petersson
I'm trying to typeset at simple crosstable with the Hmisc latex function. And I have two problems. 1. How do I make all columns the same width? The Latex function seems very unwilling to break the 'cgroup' labels and the factor level labels. Please have look at this screenshot that shows my

Re: [R] StructTS hang?

2010-01-26 Thread Uwe Ligges
On 26.01.2010 11:52, richard.kie...@rwe.com wrote: Exponential, you say? Maybe I am just not patient enough. After being unresponsive for several minutes, which in the larger examples that I work with has probably appeared like a hang, the code I just mentioned has given a result (a

Re: [R] R Output and ArcGIS

2010-01-26 Thread Corey Sparks
Yes, R thinks the coordinates are characters, that needs to change. Also, alternatively you could use the write .dbf function in the foreign() library, ArcGis likes dbf files (just no long names) Corey - Corey Sparks, PhD Assistant Professor Department of Demography and Organization

[R] Error with toString

2010-01-26 Thread anna
Hello there, I want to create a string from strings and numbers, here is my code: str - name toString(20) but it returns me this error: Error in toString(20) : could not find function .jcall what did I do wrong? I couldn't find this error anywhere... -- View this message in context:

Re: [R] R Output and ArcGIS

2010-01-26 Thread Steve Murray
Dear all, Just to let you know that thanks to your help, I've managed to solve it. For future reference, if anyone's interested (!), if you're having problems reading R-generated data from a Mac, into ArcMap on a PC, then ensure that you're using eol=\r\n in the write.table command and that

Re: [R] Formatting cgroup and factor level labels in Hmisc latex function

2010-01-26 Thread Ista Zahn
Hi Stefan, See comments in line below. On Tue, Jan 26, 2010 at 6:21 AM, Stefan Petersson stefan.peters...@inizio.se wrote: I'm trying to typeset at simple crosstable with the Hmisc latex function. And I have two problems. 1. How do I make all columns the same width? Use

[R] Graph color

2010-01-26 Thread Jose Narillos de Santos
Hi all I want to apply different colors on a simple plot: If I type par(br=gray) before a plot it puts all the image in gray but (imagine I run a simple plot) want to let the centrall box (where the dots are plotted) in white or image in lightblue. Can anyone guide me to apply this second step

Re: [R] Error with toString

2010-01-26 Thread Romain Francois
On 01/26/2010 03:09 PM, anna wrote: Hello there, I want to create a string from strings and numbers, here is my code: str- name toString(20) Where did you get that syntax from ? You need to use paste. paste( name, 20 ) [1] name 20 but it returns me this error: Error in toString(20) :

[R] update.packages on MS Windows with //server/share paths

2010-01-26 Thread Keith Jewell
Hi, update.packages(ask='graphics') gives me multiple warning (one per updated package?) similar to ... Warning: unable to move temporary installation '\\Server02\stats\R\library\2.10\file3de56e0d\locfit' to '\\Server02\stats\R\library\2.10\locfit' The final, updated, folders do not end

[R] reading a string vector

2010-01-26 Thread bia.estat
Hi, I need to read a string vector in R which is like this atgctctaatcgtcccaacaattatattactaccac, but R seems to understand it as a unique vector input when I read in like x - atgctctaatcgtcccaacaattatattactaccac. How do I unconcatenate it, so I can use each of the letters on my reading?

[R] create custom function to annotate a levelplot

2010-01-26 Thread Jaime R. Garcia M.
Dear list users, I modeled the probability of occurrence of one species: Cyperus dilatatus. I modeled the species using three different approaches: c(random,target,index) What I want to achieve is to make a plot of all prediction maps in a row with to conditional variables, that is, with the

Re: [R] Error with toString

2010-01-26 Thread jim holtman
?paste is a logical operator, not string concatenation. On Tue, Jan 26, 2010 at 9:09 AM, anna lippelann...@hotmail.com wrote: Hello there, I want to create a string from strings and numbers, here is my code: str - name toString(20) but it returns me this error: Error in toString(20) :

Re: [R] reading a string vector

2010-01-26 Thread Ista Zahn
Like this? strsplit(atgctctaatcgtcccaacaattatattactaccac, split=) -Ista On Tue, Jan 26, 2010 at 8:08 AM, bia.estat bia@live.com wrote: Hi, I need to read a string vector in R which is like this atgctctaatcgtcccaacaattatattactaccac, but R seems to understand it as a unique vector

Re: [R] reading a string vector

2010-01-26 Thread Romain Francois
On 01/26/2010 02:08 PM, bia.estat wrote: Hi, I need to read a string vector in R which is like this atgctctaatcgtcccaacaattatattactaccac, but R seems to understand it as a unique vector input when I read in like x- atgctctaatcgtcccaacaattatattactaccac. How do I unconcatenate it, so I can

Re: [R] Error with toString

2010-01-26 Thread S Ellison
name toString(20) is from Excel or OpenOffice; means 'logical and' in R, not string concatenation. paste() is simpler; sprintf() is more precise as to decimal places and format. anna lippelann...@hotmail.com 26/01/2010 14:09:15 Hello there, I want to create a string from strings and

Re: [R] Error with toString

2010-01-26 Thread anna
thanks! I thought it was a concatenator like in vb -- View this message in context: http://n4.nabble.com/Error-with-toString-tp1290327p1292949.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list

Re: [R] Error with toString

2010-01-26 Thread anna
Romain, I used the paste for numbers to as you told me and it worked. For the toString() function well I called it from the R console and that's what it returned me... -- View this message in context: http://n4.nabble.com/Error-with-toString-tp1290327p1293039.html Sent from the R help mailing

Re: [R] update.packages on MS Windows with //server/share paths

2010-01-26 Thread Gabor Grothendieck
Try mapping a drive letter to \\Server02 and then use that. For more, google for: map network drive On Tue, Jan 26, 2010 at 10:01 AM, Keith Jewell k.jew...@campden.co.uk wrote: Hi, update.packages(ask='graphics')  gives me  multiple warning (one per updated package?) similar to ...

Re: [R] Error with toString

2010-01-26 Thread Romain Francois
On 01/26/2010 04:19 PM, anna wrote: Romain, I used the paste for numbers to as you told me and it worked. For the toString() function well I called it from the R console and that's what it returned me... Yes. I understood that the first time. and I asked you to provide more details about your

[R] Large dataset importing, columns merging and splitting

2010-01-26 Thread Manta
Dear All, I have a large data set that looks like this: CVX 20070201 9 30 51 73.25 81400 0 CVX 20070201 9 30 51 73.25 100 0 CVX 20070201 9 30 51 73.25 100 0 CVX 20070201 9 30 51 73.25 300 0 First, I would like to import it by merging column 3 4 and 5, since that is the timestamp. Then, I would

[R] hdf files

2010-01-26 Thread karine heerah
hello, I have a problem to open an hdf file. i have downloaded the package 'hdf5' as it was advised on R seek. But when i try to load the file, the R console sends me an eror message: setwd(C:/Documents and Settings/Karine/Bureau/data/) #install.packages('hdf5') library(hdf5) sea_ice

Re: [R] reading a string vector

2010-01-26 Thread Henrique Dallazuanna
Try this: strsplit(atgctctaatcgtcccaacaattatattactaccac, NULL) On Tue, Jan 26, 2010 at 11:08 AM, bia.estat bia@live.com wrote: Hi, I need to read a string vector in R which is like this atgctctaatcgtcccaacaattatattactaccac, but R seems to understand it as a unique vector input

[R] problem with read.genepop function

2010-01-26 Thread Adam Peer
I'm trying to use the package ARES to produce allelic richness estimates with extrapolation beyond the sample size. I've begun by testing the program with the butterfly_borneo data provided with the package, but I seem to be having a problem with the read.genepop function. Below, I've included

[R] heatmap.2 color range

2010-01-26 Thread evgeny55
Hi, I'm trying to create a heatmap with color ranges for different values in my matrix. For example: If x 5 , use orange gradient if x 1.5, use red gradient . Right now I have the following: orgPal-brewer.pal(3,Oranges) bluPal-brewer.pal(3,Blues) redPal-brewer.pal(3,Reds) grad -

[R] Strange tick in ggplot geom_area; and ordering, again

2010-01-26 Thread Dieter Menne
In the area plots below, I see 4 triangle ticks at both sides of the bar; I believe these are non-stacked values for p, but they are definitively confusing. In addition, I would like to get the order of the colors in the plot the same as in the legend, and not arranged alphabetically (the factor

Re: [R] Strange tick in ggplot geom_area; and ordering, again

2010-01-26 Thread hadley wickham
Hi Dieter, It looks like a bug: Order works fine with bars: qplot(factor(dur),weight=p,data=cf1, fill=score, geom = bar, order = rev(score)) but not with areas: qplot(dur, p, data=cf1, fill=score, geom = area, order = rev(score)) I'll add it to my to do list. Hadley On Tue, Jan 26, 2010 at

Re: [R] Large dataset importing, columns merging and splitting

2010-01-26 Thread Gabor Grothendieck
Try this using the development version of read.zoo in zoo (which we source from the R-Forge on the fly). We use NULL in colClasses for those columns we don't need but in col.names we still have to include dummy names for them. Of what is left the index is the first three columns (1:3) which we

[R] tapply and more than one function, with different arguments

2010-01-26 Thread RINNER Heinrich
Dear R-users, I am working with R version 2.10.1. Say I have is a simple function like this: my.fun - function(x, mult) mult*sum(x) Now, I want to apply this function along with some other (say 'max') to a simple data.frame, like: dat - data.frame(x = 1:4, grp = c(a,a,b,b)) Ideally, the

Re: [R] update.packages on MS Windows with //server/share paths

2010-01-26 Thread Keith Jewell
Thanks Gabor, but expanding on my remark... I can work around by mapping a drive letter to the '//server/share', but prefer not to (for local reasons). R is installed on our network, used by others (with readonly access), maintained by me. In 'Renviron.site' I have...

[R] (list) object cannot be coerced to type 'double'

2010-01-26 Thread Muhammad Rahiz
Dear all, My script returns the following error: Error in storage.mode(test) - logical : (list) object cannot be coerced to type 'double' I've looked around and some suggest that it could be the way data have been imported. For my case, I don't think it is such. Rather I think it has to be

Re: [R] [Fwd: Re: question on sqldf syntax]

2010-01-26 Thread Seth Falcon
On 1/26/10 2:11 AM, Christian Schulz wrote: Sorry mistake from me. This was another problem in my mind , but with RMySQL. Christian library(RMySQL) library(sqldf) sqldf(Select * from mtcars) Fehler in mysqlNewConnection(drv, ...) : RS-DBI driver: (Failed to connect to database: Error:

[R] PNG resolution

2010-01-26 Thread Matthew Walker
Hi, I expect that if I change only the resolution of an image, although the image would have more pixels, if viewed in the same physical size, the elements in the image would have the same physical size but with more detail. However, when I use the res parameter of png() this is not what I

Re: [R] Strange tick in ggplot geom_area; and ordering, again

2010-01-26 Thread Dieter Menne
Hi, Hadley, can you also reproduce the “triangles” problem? Is it just a trivial corollary of the order-bug? Dieter From: hadley wickham [via R] [mailto:ml-node+1294703-876505...@n4.nabble.com] Sent: Tuesday, January 26, 2010 5:18 PM To: Dieter Menne Subject: Re: [R] Strange

Re: [R] [Fwd: Re: question on sqldf syntax]

2010-01-26 Thread Gabor Grothendieck
On Tue, Jan 26, 2010 at 11:55 AM, Seth Falcon s...@userprimary.net wrote: That sqldf only works if RMySQL is not attached seems like something worth investigating and fixing. It should be possible to avoid such conflicts by proper use of name spaces, but I have not looked into the details of

Re: [R] Graph color

2010-01-26 Thread Kyle.
If I understand what you want correctly, you'll probably want to use the col argument in whatever base graphics function you're using, rather than changing something in the graphical parameters. For example, if I wanted to add red points to an existing plot, I would use something like

[R] newb question: chron and hist()

2010-01-26 Thread kensuguro
Hi all, I'm just getting started in R so bear with my newbness. I am trying to create a very simple histogram of logins by time, with data coming in from a MYSQL query. the raw data looks like this: id user_id experience_given created_at ip_aton 1 XXX 2445626 0 2010-01-21 00:00:01 1123632036

Re: [R] Hypothsis simulation

2010-01-26 Thread Greg Snow
You can use the rbinom function to generate the random data. What to feed that function depends on things that you did not state (is this a comparison of 2 groups?, a logistic regression?, etc.). -- Gregory (Greg) L. Snow Ph.D. Statistical Data Center Intermountain Healthcare

Re: [R] (no subject)

2010-01-26 Thread Kyle.
Something along these lines might do the trick: orig - rep(sapply(seq(from=, to=, by=), as.character), times=c(1, 2, 3, 4)) I've shortened the number of repetitions, so you can test it out and see if it's what you're looking for (just change the values in the vector

Re: [R] tapply and more than one function, with different arguments

2010-01-26 Thread Peter Ehlers
Try replacing 'max' with 'mean' and see what you get. Then have a look at ?max and see what max() does with extra arguments. I'm not sure it's relevant, but it might be useful to check what Hmisc::summarize does. -Peter Ehlers RINNER Heinrich wrote: Dear R-users, I am working with R version

Re: [R] Strange tick in ggplot geom_area; and ordering, again

2010-01-26 Thread Dieter Menne
Hi, Hadley, In case you have a temporary workaround, it would be nice to have it. It’s a show stopper for my report. Bars are not an option, because the curve looks too jaggy. ‘Dieter From: hadley wickham [via R] [mailto:ml-node+1294703-876505...@n4.nabble.com] Sent:

[R] sp package coordinates and gridded problems with as.list()

2010-01-26 Thread Rhelp wanted
Dear All I hope that someone can help. I am working with sp pakage and akima library(akima) library(sp) imagine lots of different dataframes, of row = 100 columns = 3 of x and y coordinates with z values I will call these data frames for the sake of this example akima akima-as.list(1:100)

Re: [R] heatmap.2 color range

2010-01-26 Thread Dieter Menne
evgeny55 wrote: I'm trying to create a heatmap with color ranges for different values in my matrix. For example: If x 5 , use orange gradient if x 1.5, use red gradient . Right now I have the following: orgPal-brewer.pal(3,Oranges) bluPal-brewer.pal(3,Blues)

Re: [R] PNG resolution

2010-01-26 Thread Dieter Menne
Matthew Walker wrote: I expect that if I change only the resolution of an image, although the image would have more pixels, if viewed in the same physical size, the elements in the image would have the same physical size but with more detail. The sample you provided create figures

Re: [R] tapply and more than one function, with different arguments

2010-01-26 Thread Dennis Murphy
Hi: Using the plyr package, we can get the result as follows: library(plyr) my.fun - function(x, mult) mult*sum(x) dat - data.frame(x = 1:4, grp = c(a,a,b,b)) ddply(dat, .(grp), summarize, max = max(x), myfun = my.fun(x, 10)) grp max myfun 1 a 230 2 b 470 HTH, Dennis On

Re: [R] heatmap.2 color range

2010-01-26 Thread evgeny55
as a followup, I tried using the rainbow function to create the gradients but is there a way to do a reverse rainbow, ie. normally if I do: pie(rep(1,6), col=rainbow(6,start=0, end=.07)) I'll get a gradient from dark red to orangish but what if I want it to go the other way thanks -- View

Re: [R] Formatting cgroup and factor level labels in Hmisc latex function

2010-01-26 Thread Dieter Menne
stefan.petersson wrote: I'm trying to typeset at simple crosstable with the Hmisc latex function. And I have two problems. 1. How do I make all columns the same width? The Latex function seems very unwilling to break the 'cgroup' labels and the factor level labels. Please have look at

Re: [R] Large dataset importing, columns merging and splitting

2010-01-26 Thread Tom Short
If you need more aggregations on the stock (I assume that's what the first column is), I'd use the data.table package. It allows fast indexing and merge operations. That's handy if you have other features of a stock (like company size or industry sector) that you'd like to include in the

Re: [R] Formatting cgroup and factor level labels in Hmisc latex function

2010-01-26 Thread Dieter Menne
stefan.petersson wrote: I'm trying to typeset at simple crosstable with the Hmisc latex function. And I have two problems. 1. How do I make all columns the same width? The Latex function seems very unwilling to break the 'cgroup' labels and the factor level labels. Please have look at

Re: [R] PNG resolution

2010-01-26 Thread Matthew Walker
Dieter Menne wrote: Matthew Walker wrote: I expect that if I change only the resolution of an image, although the image would have more pixels, if viewed in the same physical size, the elements in the image would have the same physical size but with more detail. The sample you

Re: [R] reading a string vector

2010-01-26 Thread bia.estat
thanks, it was exactly what i needed. -- View this message in context: http://n4.nabble.com/reading-a-string-vector-tp1290289p1310721.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list

[R] Fwd: Re: Graph color

2010-01-26 Thread narillosdesantos
No mate, Sorry first of all about my indefinition (I´m Spanish, I´m improving everyday but a long road to the perfection). Sorry pleae. Second, also it is diffcoult sometimes to express what we try (sorry and many thanks just for reading of course for helping). Imagine you plot X=[2 4 6 8]

[R] Apply a function on an array with the parameter as an array

2010-01-26 Thread anna
Hello R buddies, I want to apply a function on an array but for each element of the array I want to use a different parameter, So here is how I tried to enter the function: apply(as.matrix(X),2, function, parameter1 = arrayOfParameter) I put X as a matrix because it was initially an element of a

Re: [R] Fwd: Re: Graph color

2010-01-26 Thread baptiste auguie
Hi, Try this, x - seq(0, 10, len = 100) y - jitter(sin(x), 1000) old.par - par() par(bg=grey(0.5)) plot(x, y, new = TRUE, t = n) lims - par(usr) plot(x, y, col = 1, panel.first = { rect(lims[1], lims[3], lims[2], lims[4], col = lightblue) }) HTH, baptiste 2010/1/26

Re: [R] Apply a function on an array with the parameter as an array

2010-01-26 Thread Bert Gunter
-Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of anna Sent: Tuesday, January 26, 2010 11:48 AM To: r-help@r-project.org Subject: [R] Apply a function on an array with the parameter as an array Hello R buddies, I want to apply a

Re: [R] Apply a function on an array with the parameter as an array

2010-01-26 Thread anna
No the posting guide is quite big and I wanted to take time to read it properly, since I have been posting seriously since last wednesday and I work a lot I didn't get time to do it but will do it now ;). So you say that you know exactly what I tried to do can you explain what I tried to do if

Re: [R] Apply a function on an array with the parameter as an array

2010-01-26 Thread Bert Gunter
I perhaps should have added that the etiquette of this list is to supply your correct name in your signature. This does not necessarily mean that you will be ignored if you fail to do so, but it does increase the likelihood that you will be. Bert Gunter Genentech Nonclinical Biostatistics

Re: [R] Apply a function on an array with the parameter as an array

2010-01-26 Thread Bert Gunter
Speaking **only for myself**, if you don't have the time to read and follow the posting guide, I don't have the time to try to help you. Bert Gunter Genentech Nonclinical Biostatistics __ R-help@r-project.org mailing list

Re: [R] Apply a function on an array with the parameter as an array

2010-01-26 Thread anna
Sorry! I am reading it now! -- View this message in context: http://n4.nabble.com/Apply-a-function-on-an-array-with-the-parameter-as-an-array-tp1310834p1310856.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org

Re: [R] newton method for single nonlinear equation

2010-01-26 Thread Berend Hasselman
Roslina Zakaria wrote: newton.inputsingle - function(pars,n) {  runi    - runif(974, min=0, max=1)    lendt   - length(runi)    ## Parameter to estimate    z - vector(length=lendt, mode= numeric)    z  - pars[1]       ## Constant value        alp  - 2.0165 ; rho - 0.868;    c   

[R] splitting a factor column into binary columns for each factor

2010-01-26 Thread Chuck White
Yesterday I posted the following question (my apologies for not putting a subject line): =question== Hello -- I would like to know of a more efficient way of writing the following piece of code. Thanks. options(stringsAsFactors=FALSE) orig -

[R] splitting a factor column into binary columns for each factor

2010-01-26 Thread Chuck White
Yesterday I posted the following question (my apologies for not putting a subject line): =question== Hello -- I would like to know of a more efficient way of writing the following piece of code. Thanks. options(stringsAsFactors=FALSE) orig -

[R] splitting a factor column into binary columns for each level

2010-01-26 Thread Chuck White
Yesterday I posted the following question (my apologies for not putting a subject line): =question== Hello -- I would like to know of a more efficient way of writing the following piece of code. Thanks. options(stringsAsFactors=FALSE) orig -

Re: [R] tapply and more than one function, with different arguments

2010-01-26 Thread RINNER Heinrich
Hi Dennis, now that's a very nice function, and this seems to be just what I need! Thanks a lot! -Heinrich. Von: Dennis Murphy [djmu...@gmail.com] Gesendet: Dienstag, 26. Januar 2010 19:44 An: RINNER Heinrich Cc: r-help Betreff: Re: [R] tapply and more than

[R] Trouble Highlighting outliers on Time Series Plot

2010-01-26 Thread Idgarad
I am having trouble plotting outliers on time series. Give then following code: # find STL Outliers by weight and append sh2, use Robust # this should allow the initial outliers to be filtered # this section may be commented out.

Re: [R] Strange tick in ggplot geom_area; and ordering, again

2010-01-26 Thread hadley wickham
can you also reproduce the “triangles” problem? Is it just a trivial corollary of the order-bug? The triangles are there because you have a layer of points (from the qplot default) and layer of areas. Setting geom = area in qplot fixes that. Hadley -- http://had.co.nz/

Re: [R] Strange tick in ggplot geom_area; and ordering, again

2010-01-26 Thread hadley wickham
In case you have a temporary workaround, it would be nice to have it. It’s a show stopper for my report. Bars are not an option, because the curve looks too jaggy. I just remember that to work around the problem, you can just manually order the data frame: cf1 - cf1[with(cf1, order(dur,

Re: [R] Apply a function on an array with the parameter as an array

2010-01-26 Thread anna
Ok, I read the entire posting guide and updated my signature. So I come back on my question, should I use an apply in an apply to make this? - Anna Lippel -- View this message in context:

[R] problems saving an mpfr object into a file

2010-01-26 Thread kayj
Hi All, I have a problem cbind two vectors one is a numeric and the other is an mpfr object and then saving the result into a .csv file. I am unable to save the mpfr vector into .csv file . here is the error that I get Error in as.data.frame.default(x[[i]], optional = TRUE) : cannot coerce

[R] large integers in R

2010-01-26 Thread Blanford, Glenn
Has there been any update on R's handling large integers greater than 10^9 (between 10^9 and 4x10^9) ? as.integer() in R 2.9.2 lists this as a restriction but doesnt list the actual limit or cause, nor if anyone was looking at fixing it. Glenn D Blanford, PhD mailto:glenn.blanf...@us.army.mil

Re: [R] large integers in R

2010-01-26 Thread Duncan Murdoch
On 26/01/2010 3:25 PM, Blanford, Glenn wrote: Has there been any update on R's handling large integers greater than 10^9 (between 10^9 and 4x10^9) ? as.integer() in R 2.9.2 lists this as a restriction but doesnt list the actual limit or cause, nor if anyone was looking at fixing it.

[R] Install R 2.10.1 on Windows XP Errors

2010-01-26 Thread Steve_Friedman
I have just upgraded from 2.9.2 to 2.10.1 on my XP machine. I rec'd the following error message: Error in strsplit(x[ok], [.-]) : 5 arguments passed to .Internal(strsplit) which requires 6 I also tried update.packages(checkBuilt=TRUE, ask = FALSE) update.packages(checkBuilt=TRUE,

Re: [R] Apply a function on an array with the parameter as an array

2010-01-26 Thread jim holtman
You can do something like this: lapply(1:nrow(X), function(.indx, param){ X[.indx,] * param[.indx] # apply param[i] to row i of X }, param=arrayOf Params) On Tue, Jan 26, 2010 at 3:52 PM, anna lippelann...@hotmail.com wrote: Ok, I read the entire posting guide and updated my signature.

Re: [R] Install R 2.10.1 on Windows XP Errors

2010-01-26 Thread Uwe Ligges
On 26.01.2010 22:09, steve_fried...@nps.gov wrote: I have just upgraded from 2.9.2 to 2.10.1 on my XP machine. I rec'd the following error message: Error in strsplit(x[ok], [.-]) : 5 arguments passed to .Internal(strsplit) which requires 6 I also tried update.packages(checkBuilt=TRUE,

[R] ANCOVA with measurement error in x and y

2010-01-26 Thread Dylan Beaudette
Hi, I am looking for some tips on how to incorporate known measurement error into the comparison of slopes in an analysis of covariance. Specifically, if I know that each measurement comes with a 5% error, is it possible to 'expand' the confidence intervals around the estimates for the slope

[R] add points to 3D plot using p3d {onion}

2010-01-26 Thread Bradley Christoffersen
Hi, Can anyone guide me as to how I can add points to a p3d() plot from the onion package?  I want to plot points with different colors on the same 3D plot.  Perhaps I can do this without adding points but somehow directing the 'h' parameter to give different color to points based on a factor I

[R] unidentifiable problem..

2010-01-26 Thread Jonathan
Hi All, My R installation is acting strangely and I'm hoping somebody might have an idea what's going on: I can't seem to load the RMySQL function. It seems to have installed without a problem, but when I enter: library(RMySQL) R tells me: Error in utils::readRegistry(SOFTWARE\\MySQL AB,

Re: [R] unidentifiable problem..

2010-01-26 Thread Duncan Murdoch
On 26/01/2010 4:54 PM, Jonathan wrote: Hi All, My R installation is acting strangely and I'm hoping somebody might have an idea what's going on: You need to give more details. Which R version? (If less than 2.10.1, install that and try again.) Do you have MySQL installed on that

[R] library.dynam

2010-01-26 Thread Murat Tasan
hi, i'm having some trouble getting a package to load a shared library object in .onLoad(...) i have a shared object file, say mylib.so. if i start an R session, and via the CLI specify the actual library via: dyn.load(mylib.so) everything works quite well (i.e. i can then follow with some

Re: [R] library.dynam

2010-01-26 Thread Murat Tasan
to clarify the example a bit, assume that for lib.loc i always want to search the current working directory of the R session (thus forcing the user to have mylib.so sitting in the directory returned by getwd() when loading the package). NOTE: this is not how i will finally implement this package,

Re: [R] heatmap.2 color range

2010-01-26 Thread evgeny55
thanks, I think I got the color ranges down, however, I just realized that the colors don't match the data. When I execute: grad - ifelse(randMat 5,yelPal,ifelse(randMat1.5,redPal,bluPal)) the grad matrix contains the correct hex codes corresponding to the randMat data matrix but when I

Re: [R] heatmap.2 color range

2010-01-26 Thread evgeny55
also, can you point me to some example of how to omit colors from a palette -- View this message in context: http://n4.nabble.com/heatmap-2-color-range-tp1293498p1311031.html Sent from the R help mailing list archive at Nabble.com. __

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