Re: [R] using bquote to construct function

2008-10-02 Thread Sundar Dorai-Raj
Thanks, Gabor! This workaround fixes my immediate needs. --sundar Gabor Grothendieck said the following on 10/1/2008 10:42 PM: That may be a bug in R but I think there is another problem on top of that as I don't think bquote descends into function bodies: z - 2 bquote(function(x) {x^.(z)})

Re: [R] Bug or feature with finding a list element?

2008-10-02 Thread Chunhao Tu
Hi, I have tried this with R-2.7.2 then I got alist[['goodbye']] NULL alist[['hi']] NULL alist[['hello']] [1] 10 The results make sense to me thus you might want to update your R version. chunhao B Fox wrote: This seems odd. When I try to look up a list element which has a space in

[R] How do one suggest a patch for the Foreign package

2008-10-02 Thread fsando
Hi I believe I have long time solution to the problems with the read.spss() funtion. In non-ascii locales the import of spss files into R has consistently produced errors and sometimes wouldn't allow import at all. I've made a custom version of the read.spss() function that appear to

Re: [R] fft inverse display help

2008-10-02 Thread Dieter Menne
rkevinburton at charter.net writes: ff - complex(length(fs)) ff[9] - fs[9] ff[5] - fs[5] Include the DC component: ff[1] - fs[1] Take the inverse fi - fft(ff, inverse=TRUE) / length(ff) Plot plot(fi) Notice that the plot is the Re vs. Im on the x and y axis'

Re: [R] Multiple hist(ograms) - One plot

2008-10-02 Thread Dieter Menne
Michael Just mgjust at gmail.com writes: I am trying to plot multiple histograms with the same scales, etc into one plot. The commands below produce a 3 page PDF with each histogram occupying the upper right quadrant. And use slightly different scales on the X and Y axes. I suggest that you

Re: [R] pvals.fnc in lme4 and languageR

2008-10-02 Thread Dieter Menne
Daniela Reicheneder Daniela.Reicheneder at tz.agrar.tu-muenchen.de writes: I was using the function pvals.fnc from package 'languageR' until April. I do not know which version. Yesterday I updated all my packages and tried to run my loop again. Now I get the following error message: error

[R] An AIC model selection question

2008-10-02 Thread Christoph Scherber
Dear R users, Assume I have three models with the following AIC values: model AIC df model1 -10 2 model2 -12 5 model3 -11 2 Obviously, model2 would be preferred, but it wastes 5 df compared to the other models. Would it be allowed to select model3 instead, simply because

Re: [R] Multiple hist(ograms) - One plot

2008-10-02 Thread ONKELINX, Thierry
Dear Michael, Try ggplot2. Use something like install.packages(ggplot2) library(ggplot2) recov - 0:2 n - 1000 all - data.frame(bbED = rnorm(3 * n, mean = recov), recov = factor(rep(recov, n))) ggplot(data = all, aes(x = bbED)) + geom_histogram() + facet_grid(. ~ recov) ggplot(data = all, aes(x =

Re: [R] question about working with workspaces

2008-10-02 Thread Patrick Burns
Duncan Murdoch wrote: Daniel Rabczenko wrote: Hello everybody, Two - I hope Simple questions about working with workspaces. Is there a way to force R to start in clean workspace / avoid previously saved workspace restored? Start with --no-restore. (Start with --help for the full list

Re: [R] An AIC model selection question

2008-10-02 Thread Uwe Ligges
Christoph Scherber wrote: Dear R users, Assume I have three models with the following AIC values: modelAICdf model1 -102 model2-125 model3-112 Obviously, model2 would be preferred, but it wastes 5 df compared to the other models. Would it be allowed to

Re: [R] Error: cannot allocate vector of size 117.3 Mb

2008-10-02 Thread Uwe Ligges
ram basnet wrote: Dear R users, I am using RandomForest package. While using this package, i got Error: cannot allocate vector of size 117.3 Mb .message. I had this problem earlier too but could not manage. Is there any way to solve this problem or to increase

Re: [R] Bug or feature with finding a list element?

2008-10-02 Thread Patrick Burns
I think you will find that this follows the partial matching rules: * exact match * unique partial match * take evasive action if non-unique partial match Patrick Burns [EMAIL PROTECTED] +44 (0)20 8525 0696 http://www.burns-stat.com (home of S Poetry and A Guide for the Unwilling S User) B Fox

Re: [R] lapply where each list object has multiple parts

2008-10-02 Thread Patrick Burns
The function in 'lapply' gets each component, so write a function that does what you want given a component of the list: lapply(BigList, function(x) mean(x$label1)) Patrick Burns [EMAIL PROTECTED] +44 (0)20 8525 0696 http://www.burns-stat.com (home of S Poetry and A Guide for the Unwilling S

[R] Hexagon border in plotrix's math2D.plot

2008-10-02 Thread john
Hi there, I'm attempting to use color2D.matplot(x,cellcolors=cellcol, do.hex=TRUE) from the plotrix package, but do not want to have borders around the hexagons. I've tried various approaches such as fg=white, col=white, lty=0, lwd=0 and border=NULL/FALSE/white, but none of them works. I'd

[R] contingency table, several variables from dataframe

2008-10-02 Thread Birgitle
Hello R-Users! I need a little help to build up a contingency table out of several variables. A-c(F,M,M,F,F,F,F,M,F,M,F,F) B-c(0,0,0,0,0,0,1,1,1,1,0,1) C-c(0,1,1,1,1,1,1,1,1,0,0,0) ABC-as.data.frame(cbind(A,B,C)) ABC A B C 1 F 0 0 2 M 0 1 3 M 0 1 4 F 0 1 5 F 0 1 6 F 0 1 7

Re: [R] Multiple hist(ograms) - One plot

2008-10-02 Thread Michael Just
Hello, If I use: p - ggplot(dat, aes(x=bbContag, y=..density..)) + geom_histogram() and then: p + facet_grid(. ~ sc_recov) Its a little crazy because I have 48 different values in 'sc_recov'. Instead I want to select cases from 'sc_recov' and only use three at a time: I tried: p +

[R] R Training Courses

2008-10-02 Thread Sharon Lazenby
There are still places available on the following courses. For more detailed information and a registration form please contact [EMAIL PROTECTED], or visit our website at www.mango-solutions.com http://www.mango-solutions.com/ . R for Finance

Re: [R] Multiple hist(ograms) - One plot

2008-10-02 Thread Michael Just
Dieter Menne: Thanks for the suggestion and link, it looks good. I think my trouble now is lack of basic R knowledge. Cheers, Michael For example, I tried: histogram(~bbContag | sc_recov, data=dat) This would work fine if I could select cases from sc_recov. How can I select more than one case?

[R] error message documentation: Error: no function to return from, jumping to top level

2008-10-02 Thread tolga . i . uzuner
Dear R Users, Are error messages in R documented somewhere ? I am getting the following error message and would like to track down what it means and which specific routine triggers it: Error: no function to return from, jumping to top level Once I figure out which snippet of code triggers it,

Re: [R] error message documentation: Error: no function to return from, jumping to top level

2008-10-02 Thread bartjoosen
I think you wrote a function, but pass only snippets of code from your script to your R-console. The part which return the error is the following: return() return can only be used to return from a function and not as a command in the R-console. Bart TU wrote: Dear R Users, Are error

Re: [R] Multiple hist(ograms) - One plot

2008-10-02 Thread Dieter Menne
Michael Just mgjust at gmail.com writes: sc_recov.21 - dat[dat$sc_recov=21,] Be careful: it should be ==, not = when want a comparison. df = data.frame(grp = letters[1:5],val=rnorm(100)) dfab = df[df$grp==a | df$grp==b,] # The simple way with or dfcde = df[df$grp %in% c(c,d,e),] # The

Re: [R] Multiple hist(ograms) - One plot

2008-10-02 Thread ONKELINX, Thierry
Michael, Use %in% to select multiple cases: dat[dat$sc_recov %in% c(21, 31, 41), ] ir. Thierry Onkelinx Instituut voor natuur- en bosonderzoek / Research Institute for Nature and Forest Cel biometrie, methodologie

[R] Problem with read.table()

2008-10-02 Thread Joan-Josep Vallbé
Hello everybody, I'm a new user and I'm trying to use read.table with a tab delimited file but the system tells me (i) that there are more columns than column names, and (ii) that headers and col.names are of different lengths. I have already checked my variable names and there's no blank

[R] RBloomberg :: blpConnect crash.

2008-10-02 Thread Gopi Goswami
Hi there, How are you? I'm having some issues with the following set up: WINDOWS XP R-2.7.2 RBloomberg-0.1-10 RDCOMClient-0.92-0 zoo-1.5-4 chron-2.3-24 Bloomberg is installed in the machine. The following code crashes R: library(RBloomberg) .bbfields - blpReadFields('C:\\path\\to\\blp\\API')

Re: [R] extracting diagonal from dist()

2008-10-02 Thread Tony
Stephen, I think this is what you want: diag(as.matrix(d)[-1, ]) the '-1' above means that you ignore row one in the matrix. Given that it's a square matrix, I suppose you could also also do: diag(as.matrix(d)[-1,-19]) the '-19' above mean you ignore the 19th column of hte matrix. Both give

Re: [R] contingency table, several variables from dataframe

2008-10-02 Thread Eik Vettorazzi
First of all your construction of ABC leads to a structure with 3 factor variables due to the way cbind processes the input variables - which is not intended I think. You can do sth like ABC-data.frame(A,B,C) aggregate(ABC[,2:3],by=list(A),sum) hth. Birgitle schrieb: Hello R-Users! I

Re: [R] lapply where each list object has multiple parts

2008-10-02 Thread Henrique Dallazuanna
Try this: rapply(BigList, mean)[c(1, 3)] On Wed, Oct 1, 2008 at 6:29 PM, eric lee [EMAIL PROTECTED] wrote: Hi. I have a list where each object in the list has multiple parts. I'd like to take the mean of just one part of each object. Is it possible to do this with lapply? If not, can you

Re: [R] contingency table, several variables from dataframe

2008-10-02 Thread Birgitle
Thanks for your answer. It is intended, that the variables are treated as class factor, because these are binary variables with, for example, the presence or the absence of a plant organ. As far as I understood, I have to treat them for other calculations as factor. Therefore I classified these

Re: [R] function in R

2008-10-02 Thread bartjoosen
you can see the different methods of mean by: methods(mean) Then you can type mean.default and you will see the complete code. Bart Alphonse Monkamg wrote: Dear ALL, Does anyone know how to get the complete code program for any build-in function in R, e.g. when I tape mean in

Re: [R] function in R

2008-10-02 Thread Gustaf Rydevik
On Thu, Oct 2, 2008 at 1:34 PM, Alphonse Monkamg [EMAIL PROTECTED] wrote: Dear ALL, Does anyone know how to get the complete code program for any build-in function in R, e.g. when I tape mean in the R-console, I get the following: mean function (x, ...) UseMethod(mean)

[R] Adding plane in a 3D scatterplot

2008-10-02 Thread Megh Dal
I have drawn a 3D scatter plot : library(mnormt) library(scatterplot3d) dat = cbind(rmnorm(3, rep(0,2), diag(2)), 1:3) scatterplot3d(dat) Now I want to do 2 things : 1 : In the Z-axis (i.e. height), I want to see only numbers 1,2,3, etc NOT, 1,1.5,2,2.5. 2. I want to add two

Re: [R] Problem with read.table()

2008-10-02 Thread Dieter Menne
Joan-Josep Vallbé pep.vallbe at uab.cat writes: I'm a new user and I'm trying to use read.table with a tab delimited file but the system tells me (i) that there are more columns than column names, and (ii) that headers and col.names are of different lengths. I have already checked my

[R] nls with plinear and function on RHS

2008-10-02 Thread Keith Jewell
Dear R gurus, As part of finding initial values for a much more complicated fit I want to fit a function of the form y ~ a + bx + cx^d to fairly noisy data and have hit some problems. To demonstrate the specific R-related problem, here is an idealised data set, smaller and better fitting than

Re: [R] contingency table, several variables from dataframe

2008-10-02 Thread Eik Vettorazzi
Ok, then treat them as factors - but if they are really binary and coded 0 and 1, which kind of calculation would lead to different results for a factor instead of a numeric variable? Anyway, ABC-as.data.frame(cbind(A,B,C)) aggregate(ABC[,2:3],by=list(A),FUN=function(x)sum(x=='1')) # '1' is

Re: [R] contingency table, several variables from dataframe

2008-10-02 Thread Birgitle
I think it makes a difference if I want to use a classification method like rpart () or if I use a modelling approach like glm(). Many thanks for the kind and fast help. I am still very untrained and it is difficult for me to create such codes. B. Eik Vettorazzi wrote: Ok, then treat them

[R] function in R

2008-10-02 Thread Alphonse Monkamg
Dear ALL, Does anyone know how to get the complete code program for any build-in function in R, e.g. when I tape mean in the R-console, I get the following:  mean function (x, ...) UseMethod(mean) environment: namespace:base but I need the full mean function. Thank in advance,

Re: [R] Problem with read.table()

2008-10-02 Thread Joan-Josep Vallbé
Hi, I've tried it with read.delim: ayuso - read.delim(/Users/user/Rwork/ayusotriada.txt) and now the error message is Error with make.names(col.names, unique = TRUE) : string multibyte 187 invalid thanks! On 02/10/2008, at 12:21, Joan-Josep Vallbé wrote: Hello everybody, I'm a new

Re: [R] Problem with read.table()

2008-10-02 Thread Gabor Grothendieck
Look at ?count.fields to diagnose this. On Thu, Oct 2, 2008 at 8:05 AM, Joan-Josep Vallbé [EMAIL PROTECTED] wrote: Hi, I've tried it with read.delim: ayuso - read.delim(/Users/user/Rwork/ayusotriada.txt) and now the error message is Error with make.names(col.names, unique = TRUE) : string

[R] constructing appropriate non-intercept formula

2008-10-02 Thread Ben Bolker
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Trying to work out a model formula that will do what I want ... suppose I want to model y = b_i x + epsilon (i.e. a linear model with zero intercept and with slopes differing by groups), and I want to parameterize the slopes in the usual way of

Re: [R] function in R

2008-10-02 Thread hadley wickham
On Thu, Oct 2, 2008 at 6:34 AM, Alphonse Monkamg [EMAIL PROTECTED] wrote: Dear ALL, Does anyone know how to get the complete code program for any build-in function in R, e.g. when I tape mean in the R-console, I get the following: mean function (x, ...) UseMethod(mean)

Re: [R] Problem with read.table()

2008-10-02 Thread Joan-Josep Vallbé
Hi, I've done ?count.fields and it helped me identify a blank space that I had not noticed (thanks!), but when I try to upload the table again with ayuso - read.table(/Users/user/Rwork/ayusotriada.txt, header=TRUE, sep=\t, na.strings=NA, dec=., strip.white=TRUE) or with read.delim, the

Re: [R] How do one suggest a patch for the Foreign package

2008-10-02 Thread Duncan Murdoch
In answer to your subject heading question: to suggest a patch, send an email to the package maintainer (as listed in the DESCRIPTION file). Your suggestion will get a better reception if you offer sample code/data to illustrate the problem, and a nicely written patch to the sources to fix

Re: [R] possible bug in function 'var' in R 2.7.2?

2008-10-02 Thread Ben Bolker
klaus.steenberg.larsen at risoe.dk writes: Dear R-Help, I have used R2.6.0 until I recently installed also R2.7.2 (see details below) In R 2.6.0, the following script using the function 'var' (cor(stats)): x.test - c(NA, NA, NA, NA) var(x.test, na.rm=T) gives the

Re: [R] error message documentation: Error: no function to return from, jumping to top level

2008-10-02 Thread Duncan Murdoch
[EMAIL PROTECTED] wrote: Dear R Users, Are error messages in R documented somewhere ? I am getting the following error message and would like to track down what it means and which specific routine triggers it: Error: no function to return from, jumping to top level Once I figure out which

Re: [R] An AIC model selection question

2008-10-02 Thread Ben Bolker
Uwe Ligges ligges at statistik.tu-dortmund.de writes: Christoph Scherber wrote: Dear R users, Assume I have three models with the following AIC values: modelAICdf model1 -102 model2-125 model3-112 Obviously, model2 would be preferred,

Re: [R] matrix with different type of column [SEC=UNCLASSIFIED]

2008-10-02 Thread John Kane
?data.frame Lists and data.frames allow mixed components, matrices do not --- On Thu, 10/2/08, ZHU, Justin [EMAIL PROTECTED] wrote: From: ZHU, Justin [EMAIL PROTECTED] Subject: [R] matrix with different type of column [SEC=UNCLASSIFIED] To: r-help@r-project.org Received: Thursday, October

Re: [R] Aggregate issues with subset

2008-10-02 Thread John Kane
I don't have R on this machine to check but are you sure that sc_recov still exists in s.all? Otherwise do str(s.all) and see what the object looks like. --- On Wed, 10/1/08, Michael Just [EMAIL PROTECTED] wrote: From: Michael Just [EMAIL PROTECTED] Subject: [R] Aggregate issues with

Re: [R] Problem with read.table()

2008-10-02 Thread Gabor Grothendieck
Did you try skipping the header as one respondent mentioned? read.table(..., skip = 1, header = FALSE) On Thu, Oct 2, 2008 at 9:05 AM, Joan-Josep Vallbé [EMAIL PROTECTED] wrote: Hi, I've done ?count.fields and it helped me identify a blank space that I had not noticed (thanks!), but when I try

Re: [R] error message documentation: Error: no function to return from, jumping to top level

2008-10-02 Thread Peter Dalgaard
Duncan Murdoch wrote: [EMAIL PROTECTED] wrote: Dear R Users, Are error messages in R documented somewhere ? I am getting the following error message and would like to track down what it means and which specific routine triggers it: Error: no function to return from, jumping to top level

Re: [R] error message documentation: Error: no function to return from, jumping to top level

2008-10-02 Thread tolga . i . uzuner
Many thanks, that is very helpful Peter. Regards, Tolga Peter Dalgaard [EMAIL PROTECTED] 02/10/2008 14:24 To Duncan Murdoch [EMAIL PROTECTED] cc [EMAIL PROTECTED], r-help@r-project.org Subject Re: [R] error message documentation: Error: no function to return from, jumping to top level

[R] Help with aggregation

2008-10-02 Thread Michael Pearmain
Hi All, I seem to be having a few troubles with aggregating data back onto the the dataframe, I want to take the max value of a user, and then apply this max value back against all id's that match (i.e a one to many matching) Can anyone offer any advice? is there a better way of doing this? Dummy

Re: [R] Problem with read.table()

2008-10-02 Thread Joan-Josep Vallbé
Sorry, I didn't, and removing the first row it effectively works. Thank you very much for your help. On 02/10/2008, at 15:20, Gabor Grothendieck wrote: Did you try skipping the header as one respondent mentioned? read.table(..., skip = 1, header = FALSE) On Thu, Oct 2, 2008 at 9:05 AM,

Re: [R] Help with aggregation

2008-10-02 Thread Hans Gardfjell
See ?ave (in package stats) /hans -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Michael Pearmain Sent: den 2 oktober 2008 15:28 To: r-help@r-project.org Subject: [R] Help with aggregation Hi All, I seem to be having a few troubles with aggregating

[R] Time conversion

2008-10-02 Thread Michael Pearmain
I'm trying to convert a variable that is imported from CSV into a datetime,I'm trying to use the strptime function but with no joy, can anyone offer any advise? i have a vector timestamp 07-07-2008-21:03:55 07-07-2008-19:52:55 07-07-2008-19:54:14 07-07-2008-15:24:01 07-07-2008-13:39:17

[R] non-mouse-sensitive pause between showing plots

2008-10-02 Thread Jaan Vajakas
Hello, I am using R version 2.7.2 on Windows. I would like to create a script that draws many plots and pauses before drawing a new plot, so that I could copy each plot consecutively to clipboard (Copy as metafile from context menu) or save it to a file (Save as metafile from context menu). I

Re: [R] Time conversion

2008-10-02 Thread Richard . Cotton
I'm trying to convert a variable that is imported from CSV into a datetime,I'm trying to use the strptime function but with no joy, can anyone offer any advise? i have a vector timestamp 07-07-2008-21:03:55 07-07-2008-19:52:55 07-07-2008-19:54:14 07-07-2008-15:24:01

Re: [R] fft inverse display help

2008-10-02 Thread rkevinburton
My question is how does 'plot' know to implicilty call the plot.ts (in the case of the full exact spectrum being fed back into the inverse? Kevin Dieter Menne [EMAIL PROTECTED] wrote: rkevinburton at charter.net writes: ff - complex(length(fs)) ff[9] - fs[9] ff[5] - fs[5]

Re: [R] fft inverse display help

2008-10-02 Thread Dieter Menne
rkevinburton at charter.net writes: My question is how does 'plot' know to implicilty call the plot.ts (in the case of the full exact spectrum being fed back into the inverse? So the title should be How does the specific incarnation of object orientation in R work? Try, for example, section

Re: [R] Running source() on a file in another directory

2008-10-02 Thread Gang Chen
Thanks a lot! It seems to work fine now with what you suggested. I also tried another approach by running the following on the terminal R -f ~dir1/prog.R and it read in some lines in prog.R, but then the execution halted at one point for some reason I could not figure out. Any way I could get R

[R] namespaces

2008-10-02 Thread Alexy Khrabrov
I'd like to control my namespace thoroughly, separated by task. Is there a way, in R session, to introduce namespaces for tasks dynamically and switch them as needed? Or, is there a combination of load/save workspace steps which can facilitate this? Cheers, Alexy

[R] [solutions] tapply versus by in function with more than 1 arguments

2008-10-02 Thread Cézar Freitas
Thanks to all. I summarized (in order to thank the list) the solutions to help future workers searching subjects like this at R help.   # Number of rows nr = 10 # Data set dataf = as.data.frame(matrix(c(rnorm(nr),rnorm(nr)*2,runif(nr),sort(c(1,1,2,2,3,3,sample(1:3,nr-6,replace=TRUE,ncol=4))

[R] SAS enterprise guide in R?

2008-10-02 Thread Hanek Martin
Hello, Our company has been looking at SAS enterprise guide 4 (Insightful Miner is a similar product from Insightful, I believe) which seems to provide a nice graphical way of displaying/managing a process or project. It is also accessible to non-programmers. Does any of the R GUIs provide

Re: [R] namespaces

2008-10-02 Thread Alexy Khrabrov
Yes, I could prefix everything with taskN$, but that's boring! Can I now attach and detach tasks to have one prefix-less, since they look like dataframes? What does proto buy us? To respond to Uwe here as well, I want dynamic task switching and *also* an ability to load and save task

Re: [R] namespaces

2008-10-02 Thread Gabor Grothendieck
You could have an environment for each task and place your objects for each task in its environment. Note that this is getting close to object oriented ideas where each enviroment/task is an object containing your R variables and methods and the proto package can be used to facilitate that:

Re: [R] namespaces

2008-10-02 Thread Uwe Ligges
What you mean is probably that you can have different workspaces. A Workspace is associated to the current R session and is saved/loaded in the directory from which R is started. Note that Namespaces (for packages) in R have a different meaning. Best, Uwe Ligges Alexy Khrabrov wrote: I'd

Re: [R] namespaces

2008-10-02 Thread Duncan Murdoch
On 02/10/2008 11:03 AM, Alexy Khrabrov wrote: I'd like to control my namespace thoroughly, separated by task. Is there a way, in R session, to introduce namespaces for tasks dynamically and switch them as needed? Or, is there a combination of load/save workspace steps which can facilitate

Re: [R] namespaces

2008-10-02 Thread Gabor Grothendieck
On Thu, Oct 2, 2008 at 11:26 AM, Alexy Khrabrov [EMAIL PROTECTED] wrote: Yes, I could prefix everything with taskN$, but that's boring! Can I now attach and detach tasks to have one prefix-less, since they look like dataframes? Read the proto vignette and other info to get a better

[R] combining bar and line plots with multiple axes

2008-10-02 Thread Schreiber, Stefan
Hey list, I have a barplot with a line plot overlayed (on the 2nd y axis) and it looks fine except that the origin (0) on the 2nd y axis (side=4) is not lining up with the origin on the 1st y-axis (side=2, from the barplot). Is there a way to either shift the 2nd y-axis (line plot) down or

Re: [R] namespaces

2008-10-02 Thread Greg Snow
Here is what I do: I have a different folder/directory for each of my different projects, then I start a new R session for each project that I am working on. If you start R with the folder/directory as the current working directory then the workspace for that project is loaded (and the script

Re: [R] combining bar and line plots with multiple axes

2008-10-02 Thread Greg Snow
The updateusr function in the TeachingDemos package can be used to change the user coordinates of the current plot and may do what you want. -- Gregory (Greg) L. Snow Ph.D. Statistical Data Center Intermountain Healthcare [EMAIL PROTECTED] 801.408.8111 -Original Message- From: [EMAIL

[R] spec.pgram help?

2008-10-02 Thread rkevinburton
Hopefully this will not seem too ignorant of a question. I am having a hard time picking out the sources of the differences between: abs(fft(x))^2/length(x) and spec.pgram(x, taper=0, log=no, plot=FALSE) Also from the limited testing that I have done since the DC frequency is not returned

Re: [R] namespaces

2008-10-02 Thread Gabor Grothendieck
The trick about setting the windows title is quite nifty and I've just added that to my profile. Just wanted to add two additional ways to start up R in the current directory on Windows. They are provided in the batchfiles distribution. See home page at: http://batchfiles.googlecode.com 1.

[R] StructTS hang?

2008-10-02 Thread rkevinburton
I was wondering if I could get some advice on how best to diagnose a problem that I am having with StructTS. To illlustrate the problem I have generated a rigged time series: genseq - function() { x - numeric(4*365) s - seq(as.Date(2005-01-01), as.Date(2008-12-31), by=month) ob -

Re: [R] time segments intersection

2008-10-02 Thread John Kane
help(%in%) may be of use. However I don't see any overlap in your example. --- On Wed, 10/1/08, [Ricardo Rodriguez] Your XEN ICT Team [EMAIL PROTECTED] wrote: From: [Ricardo Rodriguez] Your XEN ICT Team [EMAIL PROTECTED] Subject: [R] time segments intersection To: r-help@r-project.org Cc:

[R] missing output in summary() and anova()

2008-10-02 Thread Jordan Wong
y-c(131.79, 131.79, 135.02, 135.55, 136.46, 136.83, 137.82, 138.00, 138.06, 138.04, 140.04, 142.44, 145.47, 144.34, 146.30, 147.54, 147.80) x-c(194.5, 194.3, 197.9, 198.4, 199.4, 199.9, 200.9, 201.1, 201.4, 201.3, 203.6, 204.6, 209.5,208.6, 210.7, 211.9, 212.2) fitted.results-lm(y~x)

[R] back transforming output from negative binomial

2008-10-02 Thread Adaikalavan Ramasamy
Dear all, I used the glm.nb with the default values from the MASS package to run a negative binomial regression. Here is a simple example: set.seed(123) y - c( rep(0, 30), rpois(70, lambda=2) ) smoke - factor( sample( c(NO, YES), 100, replace=T ) ) height - c( rnorm(30,

Re: [R] fft inverse display help

2008-10-02 Thread rkevinburton
Sorry, I must be looking at a different section but when I look at 3.4 in r-intro.pdf I see: 3.4 The class of an object All objects in R have a class, reported by the function class. For simple vectors this is just the mode, for example numeric, logical, character or list, but matrix, array,

[R] re moving a vector from a list.

2008-10-02 Thread Rajasekaramya
Hi there I have 386 list of vectors.In that i want to delete 23 vector in the 53 list element. [[1]] abc dfg dft err [[2]] elm erg trr rtt similarly i have [[386]] now i want to delete or avoid trr in the [[2]]. i just tried something like this list[-list[[53]][3]] -- View this message in

Re: [R] missing output in summary() and anova()

2008-10-02 Thread John Kane
What version are you running? Under what OS. I don't seem to see the problem with 2.7.2 under Windows XP. --- On Thu, 10/2/08, Jordan Wong [EMAIL PROTECTED] wrote: From: Jordan Wong [EMAIL PROTECTED] Subject: [R] missing output in summary() and anova() To: r-help@r-project.org Received:

Re: [R] back transforming output from negative binomial

2008-10-02 Thread Ben Bolker
Adaikalavan Ramasamy a.ramasamy at imperial.ac.uk writes: Dear all, I used the glm.nb with the default values from the MASS package to run a negative binomial regression. Here is a simple example: [snip -- thanks for the example!] The question now is how do I report the results, say, for

Re: [R] missing output in summary() and anova()

2008-10-02 Thread Jordan Wong
It is 2.7.2 under Windows XP SP3. I have tried 2.6.1,2.6.2 in another computer under Windows XP SP3 also and the problem still occur. 2008/10/3 John Kane [EMAIL PROTECTED] What version are you running? Under what OS. I don't seem to see the problem with 2.7.2 under Windows XP. --- On Thu,

Re: [R] back transforming output from negative binomial

2008-10-02 Thread Ben Bolker
Adaikalavan Ramasamy wrote: Ben, fantastic. Thank you for confirming it. One more question. What do you call the back transformed variable? In my domain, people use something called the ratio of mean but I am not sure if it is the same. I am not what the ratio is between. It depends.

Re: [R] time segments intersection

2008-10-02 Thread Gabor Grothendieck
Try this: library(zoo) # create two time series to test with z1 - zooreg(0:10, Sys.Date()) z2 - lag(z1, 5) z1 2008-10-02 2008-10-03 2008-10-04 2008-10-05 2008-10-06 2008-10-07 2008-10-08 2008-10-09 2008-10-10 2008-10-11 2008-10-12 0 1 2 3 4

Re: [R] 3 curves / 1 plot

2008-10-02 Thread Bert Gunter
imho better: ?xyplot using the groups argument. -- Bert -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Kingsford Jones Sent: Thursday, October 02, 2008 11:17 AM To: Michel PETITJEAN Cc: r-help@r-project.org Subject: Re: [R] 3 curves / 1 plot

[R] Shadowed Plot

2008-10-02 Thread segun ogundimu
Hello R-users     Kindly assist me with the following plot problem in R- My data looks like this (shortened because I have about 5000 observations).   dat - read.table(textConnection(Id  Time Y  1 0   194 1 5.22 179 1 5.97 190 2 1.61 265 2 2.1  234 2 16.4 300 2 29.5 345 3 0    212 3 0.36

Re: [R] 3 curves / 1 plot

2008-10-02 Thread Chunhao Tu
Michel PETITJEAN-2 wrote: I am a new user of R. Please does somebody knows how to plot 3 datasets (x1,a1),...,(xn,an), (x1,b1),...,(xn,bn), and (x1,c1),...,(xn,cn) on a single x,y plot, each of the three datasets being plotted with its own character pch() ? (three calls to plot() erase

[R] t.test() on a list

2008-10-02 Thread Gang Chen
I have a list, myList, with each of its 9 components being a 15X15 matrix. I want to run a t-test across the list for each component in the matrix. For example, the first t-test is on myList[[1]][1, 1], myList[[2]][1, 1], ..., myList[[9]][1, 1]; and there are totally 15X15 t-tests. How can I run

Re: [R] Adding plane in a 3D scatterplot

2008-10-02 Thread Megh Dal
I got following error : library(mnormt) library(scatterplot3d) dat = cbind(rmnorm(3, rep(0,2), diag(2)), 1:3) s3d - scatterplot3d(dat, lab.z=2, scale.y=0.7, angle=20) s3d$plane3d(2,0,0, solid, col=grey) Error in object$coefficients : $ operator is invalid for atomic vectors I am using

[R] Load a program at the front end

2008-10-02 Thread Gang Chen
I want to run a R program, prog.R, interactively. My question is, is there a way I can start prog.R on the shell terminal when invoking R, instead of using source() inside R? TIA, Gang __ R-help@r-project.org mailing list

Re: [R] specifying x-axis scale on random forest variable importance plot

2008-10-02 Thread Liaw, Andy
The default range is the range of the variable in the data. It wouldn't make much sense to extend beyond that. If you want to restrict the range, the varImpPlot() function does return the x-y pairs, so you can construct your own plot from that. Andy From: A Van Dyke i am new to R and using

[R] Contour Plot Aspect Ratio

2008-10-02 Thread Sam Albers
Hello there, I have a fairly simple request (I hope!) I have produced a filled contour plot like this: library(grDevices) library(gplots) library(plotrix) filled.contour(contour, axes=F, frame.plot=TRUE, color=terrain.colors, ylab= Length Along Flume (m), key.title =

Re: [R] Bias in sample - Logistic Regression

2008-10-02 Thread Pedro.Rodriguez
Hi Shiva, Maybe you are interested in the following paper: Learning when Training Data are Costly: The Effect of Class Distribution on Tree Induction. G. Weiss and F. Provost. Journal of Artificial Intelligence Research 19 (2003) 315-354. For validating the models in those enviroments,

Re: [R] t.test() on a list

2008-10-02 Thread Bert Gunter
I am sure you will get helpful answers. I am almost as sure that you shouldn't be doing this. I suggest you consult with your local statistician. -- Bert Gunter -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Gang Chen Sent: Thursday, October 02, 2008

Re: [R] re moving a vector from a list.

2008-10-02 Thread jim holtman
Is this what you want to do - it was not clear from your example: x [[1]] [1] 1 [[2]] [1] 2 [[3]] [1] 3 [[4]] [1] 4 x - x[-3] x [[1]] [1] 1 [[2]] [1] 2 [[3]] [1] 4 Or maybe this: x - list(c( 1,2 ,3,4),c(4,5,6,7),c(8,9)) x [[1]] [1] 1 2 3 4 [[2]] [1] 4 5 6 7 [[3]] [1] 8 9 x[[2]]

Re: [R] t.test() on a list

2008-10-02 Thread Gang Chen
I appreciate your suggestion. The example I provided was fabricated because I was only focusing on the programming perspective on how to deal with such a data structure, not real statistical issues. Do you mind elaborating a little more why that would not be appreciate? I know I can do it with a

[R] aggregate empty row for pretty appearance also subtotal if possible

2008-10-02 Thread Sharma, Dhruv
Hi, To pretty print aggregates by various dimensions I needed to add a empty row in output of aggregate. For example. d-(aggregate(data[,cbind(x)], by=list(data$group1,data$group2), sum)) Group.1 Group.2 x 1 A N 3 2 A Y

[R] In the OPTIM message....

2008-10-02 Thread kathie
Dear all When I used the method, L-BFGS-B, in OPTIM, I've got the following message. - $par [1] 0.176166426835580 $value [1] 1322.17600079332 $counts function gradient 88 $convergence [1] 0 $message [1]

Re: [R] pvals.fnc in lme4 and languageR

2008-10-02 Thread Daniela Reicheneder
Hi! Yes, the example in the help of pvals.fnc is working. Is something wrong with my lmer-object? It´s created with m-lmer(file2[,11] ~ file2[, 1] + file2[, 2] + file2[, 3]+ file2[, 4] + file2[, 5] + file2[, 6]+ file2[, 7]+ file2[, 8] + file2[, 9] + file2[, 10] + (file2[, 5] | file2[, 2]),

Re: [R] In the OPTIM message....

2008-10-02 Thread Ravi Varadhan
Yes, the estimates are reliable when you get that messsage. If you want a more rigorous convergence, you can decrease factr, whose default is 1e07. However, I am not sure why you need this. Read the help for `optim' ?optim Ravi.

Re: [R] time segments intersection

2008-10-02 Thread [Ricardo Rodriguez] Your XEN ICT Team
Hi John, John Kane wrote: help(%in%) may be of use. However I don't see any overlap in your example. You are right! I've choosen an example where the intersection is 0. But we could consider this other case... endPeriod-as.POSIXlt(2008-09-30) startPeriod-as.POSIXlt(2007-10-01)

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