I am using eulerr to get venn.
My code is like:
fit1 <- euler(c("ciLAD" = 785, "LAD" = 565, "nonXL_MEF" = 167,
"ciLAD" = 3, "ciLAD_MEF" = 101,
"LAD_MEF" = 541,
"ciLAD_MEF" = 2),shape = "ellipse")
plot(fit1,quantities = TRUE,fill = rainbow(7),lty =
Apologies if my advice wasn't clear: the file you want to write to goes in
the sink() function/command. You can put the file anywhere on your file
system, no need to write into current directory and then move the file.
The print command is completely unaware of the file you point to in sink().
On Thu, Sep 13, 2018 at 7:12 PM Rich Shepard wrote:
>
> On Thu, 13 Sep 2018, Henrik Bengtsson wrote:
>
> >> sink('stat-summaries/estacada-se-precip.txt')
> >> print(summary(estacada_se_wx))
> >> sink()
> >>
> >> while accepting:
> >>
> >> pdf('../images/rainfall-estacada-se.pdf')
> >>
> >>
It is not possible for the current working directory to begin with "../". That
is like saying n=n-1, because once follow the two dots up to the next directory
the two dots refer to the next directory up.
I don't think anyone in this list understands what is going on for you, so I
recommend
Hi Fang,
Let's assume that you are using the "binom.confint" function in the
"binom" package and you have made a spelling mistake or two. This
function employs nine methods for estimating the binomial confidence
interval. Sadly, none of these is "lrt". The zero condition is
discussed in the help
You may wish to consider posting on r-sig-geo, where you may be more
likely to find expertise for this sort of thing.
-- Bert
Bert Gunter
"The trouble with having an open mind is that people keep coming along
and sticking things into it."
-- Opus (aka Berkeley Breathed in his "Bloom County"
On 09/14/2018 02:12 PM, Rich Shepard wrote:
On Thu, 13 Sep 2018, Henrik Bengtsson wrote:
sink('stat-summaries/estacada-se-precip.txt')
print(summary(estacada_se_wx))
sink()
while accepting:
pdf('../images/rainfall-estacada-se.pdf')
plot(rain_est_se)
dev.off()
Changing the sink() file
I find your "explanation" confusing. You appear to be misusing
print(). Please read ?print carefully. You print objects in R, not
files. Objects in R do not have "/" in their names (without some
trickery). See ?make.names .
-- Bert
Bert Gunter
"The trouble with having an open mind is that
There is no path in print. The path (file) is set in sink().
Peter
On Thu, Sep 13, 2018 at 4:35 PM Rich Shepard
wrote:
> On Thu, 13 Sep 2018, Peter Langfelder wrote:
>
> > Remove the / from the print command, it does not belong there.
>
> Peter,
>
>So the print() function cannot accept a
I think it may be feasible to transform the dataset DF, so that the column
names lat_lon can be a surface, where the values locate at each surface.
But I don't know how to transform DF.
On Fri, Sep 14, 2018 at 10:02 AM, lily li wrote:
> Hi Petr,
>
> I have merged the data using cbind. The
On 2018-09-13 20:58, David Winsemius wrote:
On Sep 13, 2018, at 1:15 PM, Guo, Fang (Associate)
wrote:
Hi,
I have a question with the function Binom.Confint(x,n,"method"=lrt). For
likelihood ratio test, I'd like to ask how you define the upper limit when the frequency
of successes is
For the second time: Rich, there should be no slash in the print() command.
Use the form
sink("../directory/file")
print(summary(foo)) ### no slashes here
sink(NULL)
Peter
On Thu, Sep 13, 2018 at 7:12 PM Rich Shepard
wrote:
> On Thu, 13 Sep 2018, Henrik Bengtsson wrote:
>
> >>
Hi Lily:
I haven't used it to any extent to give you specifics, but I strongly suggest
you look at the package sf, it is designed to do these sorts of things. sf
can read in the shapefile, and it has features to covert the dataframe you
describe to one of its objects, and to combine
On Thu, 13 Sep 2018, Henrik Bengtsson wrote:
sink('stat-summaries/estacada-se-precip.txt')
print(summary(estacada_se_wx))
sink()
while accepting:
pdf('../images/rainfall-estacada-se.pdf')
plot(rain_est_se)
dev.off()
Changing the sink() file to
'./stat-summaries/estacada-se-precip.txt'
Hi Petr,
I have merged the data using cbind. The dataset is like this:
DF
lat1_lon1 lat1_lon2 lat1_lon3 ... lat2_lon1
1.20 1.30 2.11 ... 1.28
1.50 1.81 3.12 ... 2.34
2.41 2.22 1.56 ... 2.50
3.11
In what package?
Binomial confidence interval functions are in several.
Bert Gunter
"The trouble with having an open mind is that people keep coming along
and sticking things into it."
-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )
On Thu, Sep 13, 2018 at 6:38 PM Guo, Fang
On 09/14/2018 08:15 AM, Guo, Fang (Associate) wrote:
Hi,
I have a question with the function Binom.Confint(x,n,"method"=lrt).
For likelihood ratio test, I'd like to ask how you define the upper
limit when the frequency of successes is zero. Thanks!
Point 1: This question is inappropriate
> On Sep 13, 2018, at 1:15 PM, Guo, Fang (Associate)
> wrote:
>
> Hi,
>
> I have a question with the function Binom.Confint(x,n,"method"=lrt). For
> likelihood ratio test, I'd like to ask how you define the upper limit when
> the frequency of successes is zero. Thanks!
First you need to
> On Sep 13, 2018, at 2:31 PM, Aimin Yan wrote:
>
> I am using eulerr to get venn.
> My code is like:
>
> fit1 <- euler(c("ciLAD" = 785, "LAD" = 565, "nonXL_MEF" = 167,
>"ciLAD" = 3, "ciLAD_MEF" = 101,
> "LAD_MEF" = 541,
>"ciLAD_MEF" = 2),shape =
I am using eulerr to get venn.
My code is like:
fit1 <- euler(c("ciLAD" = 785, "LAD" = 565, "nonXL_MEF" = 167,
"ciLAD" = 3, "ciLAD_MEF" = 101,
"LAD_MEF" = 541,
"ciLAD_MEF" = 2),shape = "ellipse")
plot(fit1,quantities = TRUE,fill = rainbow(7),lty =
Hi,
I have a question with the function Binom.Confint(x,n,"method"=lrt). For
likelihood ratio test, I'd like to ask how you define the upper limit when the
frequency of successes is zero. Thanks!
Fang Guo
Associate
CORNERSTONE RESEARCH
699 Boylston Street, 5th Floor
Boston, MA 02116-2836
On Thu, Sep 13, 2018 at 6:05 PM Rich Shepard wrote:
>
> On Thu, 13 Sep 2018, MacQueen, Don wrote:
>
> > In my experience, any path that can be used at the shell prompt in a
> > unix-alike can be used anywhere that R wants a file name.
>
> Don,
>
>That's been my experiences, too.
>
> >
On Thu, 13 Sep 2018, MacQueen, Don wrote:
In my experience, any path that can be used at the shell prompt in a
unix-alike can be used anywhere that R wants a file name.
Don,
That's been my experiences, too.
Hopefully, that helps...
That's why I don't understand why the plot()
The input example seems explicit enough, but I get confused understanding your
desired output. Can you create an example data structure in your global
environment "by hand" and use dput to give it to us?
On September 13, 2018 12:11:21 PM PDT, Andras Farkas via R-help
wrote:
>Dear All,
>
>I
In my experience, any path that can be used at the shell prompt in a unix-alike
can be used anywhere that R wants a file name.
[that is, when running R on a unix-alike system, and when pwd at the shell
prompt returns the same value as getwd() in R]
Hopefully, that helps...
-Don
--
Don
On Fri, 14 Sep 2018, Rolf Turner wrote:
This is simply incorrect; "./" refers to the current directory but "/" refers
to the root directory.
Rolf,
I was not sufficientl clear.
Note that sink("./mung.txt") gives the same result as sink("mung.txt"). I.e.
the "./" is redundant.
If you
On Thu, 13 Sep 2018, Peter Langfelder wrote:
Remove the / from the print command, it does not belong there.
Peter,
So the print() function cannot accept a relative path to a different
directory for its output? This does seem to be the case:
source('rainfall-dubois-crk-all.r')
Error in
On 09/14/2018 10:49 AM, Rich Shepard wrote:
On Thu, 13 Sep 2018, Duncan Murdoch wrote:
What did you try? Prefixing with either ./ or / doesn't make any sense.
Duncan,
Using linux (and perhaps other unices) ./ and / refer to the current
directory.
This is simply incorrect; "./"
Remove the / from the print command, it does not belong there.
sink("../directory/file.txt");
print(summary(foo))
sink(NULL)
On Thu, Sep 13, 2018 at 4:03 PM Rich Shepard
wrote:
> On Thu, 13 Sep 2018, Rich Shepard wrote:
>
> > sink('example-output.txt')
> > print(summary(df))
> > sink()
>
>
On Thu, 13 Sep 2018, Rich Shepard wrote:
sink('example-output.txt')
print(summary(df))
sink()
Let me expand on this. When the script contains
# Open PDF device to save plot
pdf('../images/rainfall-estacada-se.pdf')
...
plot(rain_est_se)
dev.off()
the file, rainfall-estacada-se.pdf is
On Thu, 13 Sep 2018, Duncan Murdoch wrote:
What did you try? Prefixing with either ./ or / doesn't make any sense.
Duncan,
Using linux (and perhaps other unices) ./ and / refer to the current
directory. My code, to print to the sub-directory
(../analyses/stat-summaries/) when the script
On Thu, Sep 13, 2018 at 3:33 PM Rich Shepard wrote:
>
>Neither ?sink nor ?capture.output indicates how the output file can be
> specified to be in a directory other than the cwd.
>
>When the cwd is ../analyses/ and I want the output to be in
> ../analyses/stat-summaries/ how do I write
Neither ?sink nor ?capture.output indicates how the output file can be
specified to be in a directory other than the cwd.
When the cwd is ../analyses/ and I want the output to be in
../analyses/stat-summaries/ how do I write this?
sink('example-output.txt')
print(summary(df))
sink()
Mod my earlier question, it seems that you just want to replicate all
rows within an id if there more than 2 rows. If this is incorrect,
ignore the rest of this post.
Otherwise...
(I assume the data frame is listed in ID order, whatever that is)
set.seed(123.456)
df
What if there is only one read in the id?
Bert Gunter
"The trouble with having an open mind is that people keep coming along
and sticking things into it."
-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )
On Thu, Sep 13, 2018 at 12:11 PM Andras Farkas via R-help
wrote:
>
>
Andras Farkas via R-help writes:
Hello,
set.seed(123.456)
df <-data.frame(ID=c(1,1,2,2,2,3,3,3,3,4,4,5,5),
read=c(1,1,0,1,1,1,0,0,0,1,0,0,0),
int=c(1,1,0,0,0,1,1,0,0,1,1,1,1),
z=rnorm(13,1,5),
y=rnorm(13,1,5))
May this will suffice?
lapply(unique(df$ID),function(x) df[df$ID==x,])
Dear All,
I have data frame:
set.seed(123.456)
df <-data.frame(ID=c(1,1,2,2,2,3,3,3,3,4,4,5,5),
read=c(1,1,0,1,1,1,0,0,0,1,0,0,0),
int=c(1,1,0,0,0,1,1,0,0,1,1,1,1),
z=rnorm(13,1,5),
y=rnorm(13,1,5))
what I would like to achieve (as
Thank you Jeff.
Cannot seem to get this to work in the fashion I want it to appear no matter
how many websites and packages I investigate.
Letting it go for the moment.
Always appreciate your advice Sir!
WHP
From: Jeff Newmiller
Sent: Thursday, September 13, 2018 10:29 AM
To:
Your data appear to be in fixed format, not space-delimited (or delimited by
any other special character), so you should use read.fwf to read it in rather
that read.table.
?read.fwf
In the future you should try to identify where your errors are or your data
don't look right and ask focused
Hi,
I hope someone can help me finalize this please.
I am coming close to what I need using variations from two ggplot2 tutorials.
This first gives me the map of the US with AK & HI but I cannot figure out how
to get my 5 regions colored
Hi
You should send your responses to R helplist, others could offer
better/different solutions.
I myself am not an expert for regex so if all your files are formated in the
same way I would use strsplit.
# I read header to test object
test<-readLines("clipboard")
str(test)
chr [1:4] "PATIENT
Hi Jim,
It works beautifully.
Thank you very much for your help.
On Wed, Sep 12, 2018 at 5:58 PM Jim Lemon wrote:
> Hi Roslinazairimah,
> You seem to be using the dotplot function from the lattice package. If so:
>
> dotplot(cyl ~ mpg, data = mtcars, groups = cyl, cex=1.2,
>
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