[R] Bug in cut.POSIXt

2009-10-15 Thread Vitalie S.
Hello Everyone, Before reporting decided to post here first: tt - structure(c(1254238817, 1254238859, 1254238969, 1254239080), class = c(POSIXt, POSIXct), tzone = ) cut.POSIXt(tt, 2) #Error in `levels-.factor`(`*tmp*`, value =

Re: [R] Completion for proto objects

2009-09-12 Thread Vitalie S.
On Fri, 11 Sep 2009 18:56:36 +0200, Gabor Grothendieck ggrothendi...@gmail.com wrote: in the devel version. If that does not help let me know offline and I will try to help you. Thanks Gabor, I solved the problem. Here is the code in case somebody else wants to have full completions for

[R] Modify functions in base packages (needed for completion for proto objects)

2009-09-11 Thread Vitalie S.
Hello everyone, I am trying to implement completion for proto objects. Proto extends environment in a hierarchical way. Thus completion should list all the names in all it's parent environments. For normal classes defining names.class would do the job, but completion for environment is

Re: [R] Completion for proto objects

2009-09-11 Thread Vitalie S.
tried to modify utils:::specialCompletions directly, did not wok either - it's something wrong with ls.proto above :(. On Fri, Sep 11, 2009 at 10:02 AM, Vitalie S. vitosm...@rambler.ru wrote: Hello everyone, I am trying to implement completion for proto objects. Proto extends environment

Re: [R] Google's R Style Guide

2009-09-01 Thread Vitalie S.
On Tue, 01 Sep 2009 10:47:36 +0200, Corrado ct...@york.ac.uk wrote: Thanks Duncan, Spencer, To clarify, the situation is: 1) I have no reasons to choose S3 on S4 or vice versa, or any other coding convention 2) Our group has not done any OO developing in R and I would be the first, so I

Re: [R] Best R text editors?

2009-08-31 Thread Vitalie S.
On Mon, 31 Aug 2009 12:25:38 +0200, Jim Lemon j...@bitwrit.com.au wrote: Liviu Andronic wrote: Could someone give a brief and subjective overview of ESS. I notice that many people use it, and many describe it as the tool for the power user. As far as I'm concerned, I've once again looked at

Re: [R] Google's R Style Guide

2009-08-31 Thread Vitalie S.
On Fri, 28 Aug 2009 16:40:53 +0200, Kevin Wright kw.s...@gmail.com wrote: On Fri, Aug 28, 2009 at 8:22 AM, Ted Harding ted.hard...@manchester.ac.ukwrote: On 28-Aug-09 12:59:24, Esmail wrote: Perhaps most of you have already seen this?

Re: [R] problem with BRugs

2009-08-25 Thread Vitalie S.
Hello Uwe, Just a related question, OpenBugs is using C and T for Censoring and Truncation. But this does not seem to work with BRugs. I am using this document http://mathstat.helsinki.fi/openbugs/Manuals/ModelSpecification.html#TheBUGSLanguageStochasticNodes Thanks, Vitalie. On Tue, 25

Re: [R] [] for R

2009-08-25 Thread Vitalie S.
see ?[ For '['-indexing only: 'i, j, ...' can be logical vectors, indicating elements/slices to select. Such vectors are recycled if necessary to match the corresponding extent. 'i, j, ...' can also be negative integers, indicating

Re: [R] problem with BRugs

2009-08-25 Thread Vitalie S.
On Tue, 25 Aug 2009 12:13:21 +0200, Uwe Ligges lig...@statistik.tu-dortmund.de wrote: Vitalie S. wrote: Hello Uwe, Just a related question, OpenBugs is using C and T for Censoring and Truncation. But this does not seem to work with BRugs. I am using this document http

Re: [R] problem with BRugs

2009-08-25 Thread Vitalie S.
This is a BUGS error message that indeed tells you that BUGS cannot truncate that density - not related to R at all. Best, Uwe Ligges Yes, indeed, that does not work in OpenBugs as well. Means that documentation of Open bugs is incorrect (they are using dnorm there). Also I works

Re: [R] Problem with passing a string to subset

2009-08-22 Thread Vitalie S.
On Fri, 21 Aug 2009 22:38:09 +0200, baptiste auguie baptiste.aug...@googlemail.com wrote: Try this, mystr -c==1 subset(foo, eval(parse(text = mystr)) ) library(fortunes) fortune(parse) # try several times # I prefer this, but there is probably a better way mycond- quote(c==1) subset(foo,

Re: [R] how to compute this summation...

2009-08-21 Thread Vitalie S.
On Thu, 20 Aug 2009 02:36:38 +0200, kathie kathryn.lord2...@gmail.com wrote: Dear R users, I try to compute this summation, http://www.nabble.com/file/p25054272/dd.jpg where f(y|x) = Negative Binomial(y, mu=exp(x' beta), size=1/alp) http://www.nabble.com/file/p25054272/aa.jpg

Re: [R] help with expression()

2009-08-18 Thread Vitalie S.
On Mon, 17 Aug 2009 12:24:28 +0200, deanj2k dl...@le.ac.uk wrote: Hello. I have a vector and within that vector is one expression. When I display this vector it comes up as expression(NA_character_, NA_character_, Null Effect, Pooled effect, NA_character_, NA_character_, NA_character_,

Re: [R] number in R

2009-08-18 Thread Vitalie S.
On Mon, 17 Aug 2009 16:49:53 +0200, Inchallah Yarab inchallahya...@yahoo.fr wrote: Hi, i export data from an csv file like this : Data - read.csv2(c:/Art.csv,sep=,) # import data into R Data - Data [1:5,1:5]# extracting the first 5 rows and columns Data Policy.Number AXA.Entity Country

Re: [R] re ading transposed data in read.csv

2009-08-15 Thread Vitalie S.
On Sat, 15 Aug 2009 09:20:04 +0200, Dieter Menne dieter.me...@menne-biomed.de wrote: sandsky wrote: I have a data set (csv); e.g., ID samp1 samp2 samp3 samp4 G1 2332 12 87 G2 8545 49 76 G3 1246 39 28 G4 73

Re: [R] Validity check when setting slot

2009-08-13 Thread Vitalie S.
Hi, RG Hi, RG I'm wondering if the following behaviour is normal: RG setClass('A', representation(number='numeric'), RG validity=function(object){ RG if( obj...@number -1 ) return(Invalid number); TRUE}) [1] A RG a - new('A') RG a An object of class

Re: [R] Matrix addition function

2009-08-13 Thread Vitalie S.
On Thu, 13 Aug 2009 15:11:03 +0200, Michael Knudsen micknud...@gmail.com wrote: On Thu, Aug 13, 2009 at 11:35 AM, Lina Rusyteliner...@yahoo.co.uk wrote: Hi Lina, What function can I use for matrices addition? I couldn’t find any information about it in the manual or in the internet.

Re: [R] A question regarding R scoping

2009-08-08 Thread Vitalie S.
You have to understand the difference between the lexical scope of a function (which gives the search path for variables) and call stack (which is a path of function calls). This gives an enormous flexibility in programming, perhaps at the cost of confusing some people. See

Re: [R] Completion for custom $ operator?

2009-08-06 Thread Vitalie S.
Completion should be automatic if you define names() to return the valid names. Thank you Deepayan, that works beautifully. I wonder though; names function for environment objects always returns NULL, but completion still works. Looks tricky. Vitalie. --

[R] Completion for custom $ operator?

2009-08-04 Thread Vitalie S.
Dear UseRs, I declared a `$` method for a S4 class. Can I have ab automatic completion for this operator in R? Lists and environment objects provide this feature by default, but my object is an extension of function class which does not have subseting defined. How to be? Thanks for any

[R] Make functions aware of theyr own slots.

2009-06-25 Thread Vitalie S.
Hello, Is there a way to access function's slots from inside the function? I want to make functions slot dependent without recurring to generic function mechanism. Probably this goes a bit against R philosophy, but otherwise I don't really see the use of extending functions in R.

Re: [R] S4: Bug in group method defenition (Compare)

2009-06-16 Thread Vitalie S.
Setting methods for groups (compare in this case) does not work properly. Once one method is set ,redefining it or even removing does not change the behavior: Can anyone suggest how to refresh methods table for some particular generic? (in the above case Compare group generic). For now

[R] S4: Bug in group method defenition (Compare)

2009-06-15 Thread Vitalie S.
Dear UseRs, Setting methods for groups (compare in this case) does not work properly. Once one method is set ,redefining it or even removing does not change the behavior: setClass(foo ,representation(range=numeric) ) #[1] foo setMethod(Compare,c(e1=ANY,e2=foo),

Re: [R] S4: When is validObject issued? (or why S4 is killing me:( ..

2009-06-06 Thread Vitalie S.
setMethod(initialize,test2, function(.Object,...){ .Object-callNextMethod(.Object,...) validity is checked in the preceeding line .obj...@b-.obj...@a ## here b is initialized ## .Object }) new(test2) Error in if

[R] S4: Initialization method called during setClass??

2009-06-05 Thread Vitalie S.
Dear UseRs, A simple class inheritance example: setClass(test,representation(a=numeric)) setMethod(initialize,test, function(.Object,x,...){ print(Initialization!!!) callNextMethod(.Object,a=x,...) }) new(test,x=23) [1] Initialization!!! An

[R] S4: When is validObject issued? (or why S4 is killing me:( ..

2009-06-05 Thread Vitalie S.
Dear UseRs, Does anyone know when exactly the validity is checked in S4? Documentation is silent:(. Here is a small example: setClass(test1,representation(a=numeric)) setMethod(initialize,test1, function(.Object,...){ a-runif(1) ## here slot a is initialized ##

Re: [R] passing arguments to subset from a function

2008-12-17 Thread Vitalie S.
On Wed, 17 Dec 2008 20:07:08 +0100, GOUACHE David d.goua...@arvalisinstitutduvegetal.fr wrote: argument which I will pass on to subset() somewhere inside my function. I would use the example of .() function from plyr package in this case: .-function (...){