Hi Alina,
Did you try multi2di() to remove polytomies?
Best,
Emmanuel
Le 23/01/2019 à 17:41, Alina van dijk a écrit :
Hi everyone,
My name is Alina, I'm attending master degree in ecology and I have a
little problem with my consensus phylogeny. I used 1000 phylogeny of
birdtree to construct
I typically use a non-R tool like treeannotator (from the BEAST package)
to do this type of thing, especially when involving large numbers of big
trees.
HTH.
Joseph.
On Wed, Jan 23, 2019 at 4:42 PM Alina van dijk wrote:
> Hi everyone,
>
> My name is Alina, I'm attending master degree in
Hi everyone,
My name is Alina, I'm attending master degree in ecology and I have a
little problem with my consensus phylogeny. I used 1000 phylogeny of
birdtree to construct the consensus tree but now I need to insert the dates
in this consensus tree.
To accomplish this idea, I tried different
Thanks a lot Emmanuel. It works perfectly.
Amitiés, Jérémie.
Jérémie Bardin, Dr.
CR2P - Centre de Recherche en Paléontologie - ParisSorbonne Université - MNHN
- CNRS
Site Jussieu, Tour 46-56, 5°et.
4 place Jussieu, 75252 Paris Cedex 05
tel. +331.44.27.51.77.
jeremie.bar...@upmc.fr /
Hi Jérémie,
You're correct: the current version of write.tree() scales with n^2.
This seems to be related to calling the generic '[[' operator. You can
modify the code with the usual fix(write.tree), then insert these two lines:
phy <- .uncompressTipLabel(phy)
class(phy) <- NULL
Hi all,
I tried to export 2 millions trees to a .tre file with write.tree. This never
ends, thus i tried to get why and realized that the time to write the .tre
depends exponentially on the number of trees.
trees<-allTrees(9,rooted=T)to<-seq(1,200,1)durations<-NAfor(i in
