Dear Liam,
This is great, almost exactly what I needed. I will have to get our tree
out and see if I can get it to work in R.
One question, is it possible to do a cumulative tree like this (
https://proopnarine.files.wordpress.com/2018/11/evolfaunas.png)? This is a
good example of the graph I am
I like Will's suggestion. Unfortunately, /phytools::ltt.simmap/ method
in /phytools/ on CRAN does not support ultrametric trees.
I have updated it on GitHub & also posted a workflow to my blog that may
capture what Russell is going for (if I understand it correctly):
The output from Liam's function should be pretty useable for ggplot, too. I
think the function has a plot argument that you can just set to False.
On Sat, Oct 28, 2023, 6:37 PM Russell Engelman
wrote:
> It looks like what Liam wrote (specifically, the final figure in the post)
> is pretty close
It looks like what Liam wrote (specifically, the final figure in the post)
is pretty close to what I am looking for.
Emmanuel's suggestion of using ltt.plots.coords might also work, and it
might be easier to input that data into ggplot if I could find some way to
merge the various matrices.
