[R-sig-phylo] max tree depth in ace and fitMk

rescale(eel.tree, "depth", 130) What am I doing wrong? Any help will be much appreciated! Martin -- Martin J. Ramirez Curador y Jefe, División Aracnología / Curator & Head, Division of Arachnology Museo Argentino de Ciencias Naturales - CONICET Av. Angel Gallardo 470 C1405D

Re: [R-sig-phylo] collapsing sets of nodes based on label values

Hi Carla, I use this function of ips: collapseUnsupportedEdges(phy, value = "node.label", cutoff) It took me a while to figure out that there is a trick to do with multiPhylo - here is the code I use for files with multiple

[R-sig-phylo] change colors in make.simmap

Hello, I want to change the colors of a Bayesian stochastic mapping, using make.simmap (e.g., switching blue and red). Is it possible? (I tried switching the order of the columns of the states -- no effect.) Thanks for any help! Martin Ramirez ___ R

[R-sig-phylo] fitting multiple OU optima

Hi Paolo, I'm not sure if what you ask has been implemented yet in any package, but something that you can do, in the case it hasn't, is to set up models with as many regimes as you consider realistic and feasible and then compare them using AIC. Cheers, Santiago