[R-sig-phylo] Installing diversitree on OS X Mavericks, R 3.1.0

2014-05-27 Thread Jonathan Chang
Dear list, If you live on the cutting edge and installed the special Mavericks version of R 3.1.0, you probably started bleeding when you tried to install diversitree and found that it didn't work. I've written a brief primer on how to get diversitree installed and running:

Re: [R-sig-phylo] Installing diversitree on OS X Mavericks, R 3.1.0

2014-05-27 Thread Gustavo Burin Ferreira
Dear John and list, I have tried to use your tutorial, but without success. I am getting the following error: ld: library not found for -lquadmath clang: error: linker command failed with exit code 1 (use -v to see invocation) make: *** [diversitree.so] Error 1 ERROR: compilation failed for

Re: [R-sig-phylo] Installing diversitree on OS X Mavericks, R 3.1.0

2014-05-27 Thread Jonathan Chang
It looks like there's an issue with your install of Homebrew, since installing those packages should also link them into the proper directories. Try brew unlink gsl gcc fftw brew link gsl gcc fftw These should run without error. If you can't link those packages then it means you already have a

Re: [R-sig-phylo] Installing diversitree on OS X Mavericks, R 3.1.0

2014-05-27 Thread Gustavo Burin Ferreira
Dear Jonathan, the last solution worked perfectly! Thank you very very much! Best, *Gustavo Burin Ferreira, **Msc.* Instituto de Biociências Universidade de São Paulo Tel: (11) 98525-8948 On Tue, May 27, 2014 at 6:30 PM, Jonathan Chang jonathan.ch...@ucla.eduwrote: Actually I suppose the