Hi
Having another problem with the same function now. What you suggested
worked for one tree, but for the attached tree and file it didn't...
I get:
ttree-date.phylo(tree, ages, rlen=10, method=equal)
Error: subscript out of bounds
traceback()
1: date.phylo(tree, ages, rlen = 10, method =
Hi Roland,
Just after the error, type:
traceback()
This will show you, hopefully, where the error happened.
Best,
Emmanuel
-Original Message-
From: Roland Sookias r.sook...@gmail.com
Sender: r-sig-phylo-boun...@r-project.org
Date: Thu, 21 Jul 2011 12:44:30
To:
Dear Roland,
it would be good if you add the datasets, that one can reproduce your
results (archotreeresolved, ages). I would guess from the error
message that your ages list may has the wrong format.
Also traceback() sometimes tells you where the error happens exactly.
Kind regards
Klaus
On
Hi
Thanks guys.
Attached are the two files (will these work via the list?)
When I type trackback() all I get is 1: date.phylo(archotreeresolved, ages,
rlen = 1, method = equal).
Roland
On Thu, Jul 21, 2011 at 1:24 PM, Klaus Schliep klaus.schl...@gmail.comwrote:
Dear Roland,
it would be
Hi Roland,
as I suspected, your ages list was not in the right format (has
nothing to do with ape).
Try this:
tmp = read.csv(agescut.csv, header=FALSE)
ages = matrix(tmp[, 2], ncol=1)
rownames(ages) = tmp[,1]
tree = read.tree(archotreeresolved6.tre)
ttree-date.phylo(tree, ages, rlen=1,
Great! It worked. What format should the file be in then? I thought I'd
followed the format specified.. Thanks very much indeed :)
On Thu, Jul 21, 2011 at 4:10 PM, Klaus Schliep klaus.schl...@gmail.comwrote:
Hi Roland,
as I suspected, your ages list was not in the right format (has
nothing
Hi Roland!
ages should be a matrix, with row names and the ages in the first column.
On 7/21/11, Roland Sookias r.sook...@gmail.com wrote:
Great! It worked. What format should the file be in then? I thought I'd
followed the format specified.. Thanks very much indeed :)
On Thu, Jul 21, 2011 at
