Re: [R-sig-phylo] Getting ACE information out of R

2011-08-11 Thread Morgan Langille
Perfect! Exactly the information I needed. Thanks, Morgan On Wed, Aug 10, 2011 at 4:15 PM, David Bapst dwba...@uchicago.edu wrote: Morgan- The node labels from ace() are the ID numbers used in the edge matrix (you can see that with tree$edge, where 'tree' is your phylogeny object), and the

Re: [R-sig-phylo] Getting ACE information out of R

2011-08-10 Thread David Bapst
Morgan- The node labels from ace() are the ID numbers used in the edge matrix (you can see that with tree$edge, where 'tree' is your phylogeny object), and the are numbered from (Ntip(tree)+1) to (Ntip(tree)+Ntip(tree)-1). Thus, to give your tree the IDs from the edge matrix as node labels, just