Re: [R-sig-phylo] Ouch - hansen, brown

2011-07-25 Thread Aaron King
Hi Roland, It looks like it probably has to do ith your data. If you send a code that reproduces the error, we can help you. Aaron On Jul 25, 2011, at 7:44, Roland Sookias r.sook...@gmail.com wrote: Hi I posted this on r-help by accident, and realize it's more appropriate here, so I'll

Re: [R-sig-phylo] Ouch - hansen, brown

2011-07-25 Thread Aaron A. King
I note that Protorosaurus_speneri sits at an unspecified time print(archotreeouch) as(archotreeouch,data.frame)[137,] It would be possible for me to verify this is the only problem were you to provide code that reproduces your problem from scratch. In particular, since I cannot see how you

Re: [R-sig-phylo] Ouch - hansen, brown

2011-07-25 Thread Aaron A. King
Code means a sequence of R commands that I can run to reproduce your problem. As opposed to a narrative that I have to take guesses on, possibly wasting both your time and mine. You might have a look at ?savehistory to get a quick way to obtain such a thing. Your problem is caused by the

Re: [R-sig-phylo] Ouch - hansen, brown

2011-07-25 Thread Aaron A. King
Try plot(archotreeouch,node.names=TRUE) ?paint Best practice is tricky. I don't think there is a general answer to that question: the best practice probably depends strongly on the data and the scientific question. Certainly I know of no reason to suppose that specifying internal selective