Re: [R-sig-phylo] Multi-Predictor ANOVA?

2015-02-04 Thread William Gearty
Hi Liam, Thanks for the help! Does this type of linear model work if X1 and X2 are categorical variables? -Will On Wed, Feb 4, 2015 at 2:48 PM, Liam J. Revell liam.rev...@umb.edu wrote: Hi William. You should be able to fit this kind of model using gls in the nlme package. In your case,

Re: [R-sig-phylo] Multi-Predictor ANOVA?

2015-02-04 Thread Peter Smits
Quick correction: index variables are transformed into n x (k - 1) matrices of INDICATOR variables. On Wed, Feb 4, 2015 at 5:25 PM, Peter Smits psm...@uchicago.edu wrote: Hi Will, Quick answer to that question: yes. The key is that categorical variables cannot be modeled directly in a GLM

Re: [R-sig-phylo] Multi-Predictor ANOVA?

2015-02-04 Thread William Gearty
Excellent, thanks Peter! On Wed, Feb 4, 2015 at 3:42 PM, Peter Smits psm...@uchicago.edu wrote: Quick correction: index variables are transformed into n x (k - 1) matrices of INDICATOR variables. On Wed, Feb 4, 2015 at 5:25 PM, Peter Smits psm...@uchicago.edu wrote: Hi Will, Quick answer