Hi Roland,
It looks like it probably has to do ith your data. If you send a code that
reproduces the error, we can help you.
Aaron
On Jul 25, 2011, at 7:44, Roland Sookias r.sook...@gmail.com wrote:
Hi
I posted this on r-help by accident, and realize it's more appropriate here,
so I'll
I note that Protorosaurus_speneri sits at an unspecified time
print(archotreeouch)
as(archotreeouch,data.frame)[137,]
It would be possible for me to verify this is the only problem were you to
provide code that reproduces your problem from scratch. In particular, since
I cannot see how you
Code means a sequence of R commands that I can run to reproduce your
problem. As opposed to a narrative that I have to take guesses on, possibly
wasting both your time and mine. You might have a look at
?savehistory
to get a quick way to obtain such a thing.
Your problem is caused by the
Try
plot(archotreeouch,node.names=TRUE)
?paint
Best practice is tricky. I don't think there is a general answer to that
question: the best practice probably depends strongly on the data and the
scientific question. Certainly I know of no reason to suppose that specifying
internal selective
Hello Jarrod,
try:
h.d-as.hclust(reorder(multi2di(host.tree)))
as.dendrogram(h.d)
Maybe it works.
Regards,
Klaus
On 7/25/11, Jarrod Hadfield j.hadfi...@ed.ac.uk wrote:
Dear list,
I'm trying to convert a phylo object into a dendrogram object with
little success. host.tree is a rooted
Hi, all.
I'm working on a script that iteratively removes taxa from an initial
total tree and re-searches for optimal (pruned) topologies after
outputting a pruned alignment.
I'm trying to get a few things to happen:
First, the script iteratively checks to make sure that the taxon names
match
Hi John
I added a few comments.
Regards,
Klaus
On 7/25/11, John Denton jden...@amnh.org wrote:
Hi, all.
I'm working on a script that iteratively removes taxa from an initial
total tree and re-searches for optimal (pruned) topologies after
outputting a pruned alignment.
I'm trying to get
