Re: [R-sig-phylo] time axis in fan style phylogeny: arcs did not appear in eps file
Hey Liam,
Thank you so much for your reply.
Yes, the arcs appear when I save it in pdf, which supports an image in a
good resolution. I just changed the *make.transparent* but the arcs did not
appear in the plot.
Thanks a lot again!
All the best
Felipe
Em dom., 25 de jun. de 2023 às 01:37, Liam J. Revell
escreveu:
> Dear Felipe.
>
> It's possible that .eps doesn't support transparency. Have you tried
> plotting to a different device, e.g., .pdf or .png? Alternatively, you
> could undo the transparency by changing *make.transparent("blue",0.1)*
> for just *"blue"*.
>
> All the best, Liam
> Liam J. Revell
> Professor of Biology, University of Massachusetts Boston
> Web: http://faculty.umb.edu/liam.revell/
> Book: Phylogenetic Comparative Methods in R
>
> (*Princeton University Press*, 2022)
>
>
> On 6/25/2023 12:09 AM, Felipe Rossetto wrote:
>
>
> You don't often get email from rossetto.fel...@gmail.com. Learn why this
> is important
>
> CAUTION: EXTERNAL SENDER
>
> Dear all,
>
> I am including time axis in a circular phylogeny following this nice post
>
> http://blog.phytools.org/2018/02/another-technique-for-including-time.html
>
> where this loop is used to drawing arcs:
>
> for(i in 1:length(obj)){ a1<-0 a2<-2*pi draw.arc(0,0,radius=obj[i],a1,a2,
> lwd=1, col=make.transparent("blue",0.1)) }
> But when I saved the circular phylogeny in eps for further editing i
> illustrator, the arcs do not appear, and please, I would like to know if
> there is a command where it is possible to save the arcs in a eps file.
>
> Thanks a lot
>
> Felipe
>
>
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Re: [R-sig-phylo] time axis in fan style phylogeny: arcs did not appear in eps file
Dear Felipe.
It's possible that .eps doesn't support transparency. Have you tried
plotting to a different device, e.g., .pdf or .png? Alternatively, you
could undo the transparency by changing /make.transparent("blue",0.1)/
for just /"blue"/.
All the best, Liam
Liam J. Revell
Professor of Biology, University of Massachusetts Boston
Web: http://faculty.umb.edu/liam.revell/
Book: Phylogenetic Comparative Methods in R
(/Princeton University Press/, 2022)
On 6/25/2023 12:09 AM, Felipe Rossetto wrote:
>
>
> You don't often get email from rossetto.fel...@gmail.com. Learn why
> this is important
>
>
> CAUTION: EXTERNAL SENDER
>
> Dear all,
>
> I am including time axis in a circular phylogeny following this nice post
>
> http://blog.phytools.org/2018/02/another-technique-for-including-time.html
>
>
> where this loop is used to drawing arcs:
>
> for(iin1:length(obj)){a1<-0a2<-2*pidraw.arc(0,0,radius=obj[i],a1,a2,lwd=1,
> col=make.transparent("blue",0.1))}
> But when I saved the circular phylogeny in eps for further editing i
> illustrator, the arcs do not appear, and please, I would like to know
> if there is a command where it is possible to save the arcs in a eps file.
>
> Thanks a lot
>
> Felipe
[[alternative HTML version deleted]]
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[R-sig-phylo] time axis in fan style phylogeny: arcs did not appear in eps file
Dear all,
I am including time axis in a circular phylogeny following this nice post
http://blog.phytools.org/2018/02/another-technique-for-including-time.html
where this loop is used to drawing arcs:
for(i in 1:length(obj)){ a1<-0 a2<-2*pi draw.arc(0,0,radius=obj[i],a1,a2,lwd
=1, col=make.transparent("blue",0.1)) }
But when I saved the circular phylogeny in eps for further editing i
illustrator, the arcs do not appear, and please, I would like to know if
there is a command where it is possible to save the arcs in a eps file.
Thanks a lot
Felipe
[[alternative HTML version deleted]]
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https://stat.ethz.ch/mailman/listinfo/r-sig-phylo
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