Re: [R-sig-phylo] Node Ages Without Phylocom

Hi Marcelino, Thank you for answering. Are you running Phylocom on a Mac or a PC? I am also running Phylocom 4.2 (which comes with 4.1 at its heading), but I am running on a PC. Cheers, Alexandre -- Dr. Alexandre F. Souza Professor Ajunto II Universidade Federal do Rio Grande do Norte CB

[R-sig-phylo] Node Ages Without Phylocom

,ocotea_pulchella)ocotea)lauraceae,(hennecartia_omphalandra,mollinedia_elegans)monimiaceae),(rollinia_rugulosa,rollinia_salicifolia,rollinia_sylvatica)rollinia))magnoliales_to_asterales,(araucaria_angustifolia,podocarpus_lambertii))seedplants,alsophila_sp)euphyllophyte; -- Dr. Alexandre F. Souza

Re: [R-sig-phylo] Stuck with Phylomatic tree!

::read_newick_phylo(file=test.tre) where test.tre is a file that contains the tree string you put in the email. The function returns a tree in ape's phylo format (with the singleton nodes removed). cheers, -- François On Tue, Mar 3, 2015 at 7:27 PM, Alexandre F. Souza alexsouza.cb.ufrn

[R-sig-phylo] Stuck with Phylomatic tree!

, myrsinaceae/myrsine/myrsine_lorentziana, myrsinaceae/myrsine/myrsine_sp, myrsinaceae/myrsine/myrsine_umbellata, ]; -- Dr. Alexandre F. Souza Professor Ajunto II Universidade Federal do Rio Grande do Norte CB, Departamento de Ecologia Campus Universitário - Lagoa Nova 59072-970 - Natal, RN - Brasil lattes

[R-sig-phylo] To include or not to include spatial autocorrelation co-variables?

tributing to explain the probability of survivorship, why should anyone keep it? How could I drop the other non-significant fixed variables if I decide to keep the MEM? What do you think? Thanks in advence for any thoughts, Cheers, Alexandre -- Dr. Alexandre F. Souza Professor Adjunto III Uni

[R-sig-phylo] How to embed a function within a matrix

contents in R I would not like to restrict this theme to Excel. Thank you very much in advance, Alexandre -- Dr. Alexandre F. Souza Professor Adjunto III Universidade Federal do Rio Grande do Norte CB, Departamento de Ecologia Campus Universitário - Lagoa Nova 59072-970 - Natal, RN - Brasil lattes

[R-sig-phylo] Conversion between phylo and hclust objects?

t;, method = "average", p=0.5)$cons dendro.upgma = as.hclust.phylo(arvore.upgma) plot(dendro.upgma) The resulting tree is a total mess! -- Dr. Alexandre F. Souza Professor Adjunto III Universidade Federal do Rio Grande do Norte CB, Departamento de Ecologia Campus Universitário - Lagoa Nova 5

[R-sig-phylo] Jaccard x Nestedness?

or not) also mixes both turnover and nestedness as the Sorensen index? Thank you in advance for any thoughts, Alexandre -- Dr. Alexandre F. Souza Professor Associado Chefe do Departamento de Ecologia Universidade Federal do Rio Grande do Norte CB, Departamento de Ecologia Campus Universitário - Lagoa