[R-sig-phylo] R: variation in rates over time

Hi look also for motmot and auteur packages best Paolo Da: r-sig-phylo-boun...@r-project.org [r-sig-phylo-boun...@r-project.org] per conto di Matt Pennell [mwpenn...@gmail.com] Inviato: martedì 18 settembre 2012 1.46 A: Jason S Cc:

[R-sig-phylo] on evolutionary models

Hi pas, Besides the other arguments, I think that one should test for phylogenetic signal AFTER trasforming the tree according to the best mode of evolution IF it is not brownian. Maybe someone else can add some more on this. best paolo Da:

Re: [R-sig-phylo] phylogenetic multiple correspondence analysis

Hi, maybe you could perform a standard MCA and then you could use the scores as continuous vars in standard comparative methods (including phyl pca) dont know if this helps.. best paolo Da: r-sig-phylo-boun...@r-project.org

Re: [R-sig-phylo] Mesquite issues

Thanks a lot Alejandro! I hope to solve my issues! best paolo Da: Alejandro Gonzalez alejandro.gonza...@ebd.csic.es Inviato: venerd? 31 gennaio 2014 15.05 A: Paolo Piras Cc: R-phylo Mailing-list Oggetto: Re: [R-sig-phylo] Mesquite issues Paolo, The issue

Re: [R-sig-phylo] BAMM: Bayesian analyses of macroevolutionary rates

Dear Dan, does BAMM can work using NON ultrametric trees? Thanks paolo Da: r-sig-phylo-boun...@r-project.org r-sig-phylo-boun...@r-project.org per conto di Dan Rabosky drabo...@umich.edu Inviato: venerdì 7 marzo 2014 17.40 A: r-sig-phylo@r-project.org

[R-sig-phylo] edge color in phylomorphospace3d

Dear list, there is a possbility to color some specific edges in the phylomorphospace3d() ? plot.phylo() has the argument edge.color to do that in classical tree plotting. I need it, however, in the above mentioned function. I superficially took a ook to the code, but before trying to modify it

Re: [R-sig-phylo] edge color in phylomorphospace3d

Thankyou very much to all for your effort in improving the function! all the best paoo Da: Liam J. Revell liam.rev...@umb.edu Inviato: martedì 10 giugno 2014 15.13 A: Jonas Eberle; Paolo Piras; r-sig-phylo@r-project.org Oggetto: Re: edge color

Re: [R-sig-phylo] determine multistate characters in nexus data matrix

Da: Liam J. Revell liam.rev...@umb.edu Inviato: sabato 21 marzo 2015 02.06 A: Paolo Piras; Jacob Berv Cc: r-sig-phylo@r-project.org Oggetto: Re: determine multistate characters in nexus data matrix I don't know if this has already been answered, but read.nexus.data

[R-sig-phylo] determine multistate characters in nexus data matrix

, able to do that? Thankyou in advance Paolo Piras ___ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/

Re: [R-sig-phylo] PGLS with non-ultrametric tree

I really think this post could be useful for the discussion https://stat.ethz.ch/pipermail/r-sig-phylo/2010-September/000773.html best paolo Da: R-sig-phylo r-sig-phylo-boun...@r-project.org per conto di Solomon Chak tc...@vims.edu Inviato: giovedì 16