Dear Laura.
The marginal ancestral states that you obtained under the "ER" model are
consistent with a very high backward/forward rate of transitions between
the two states. If the best-fitting model implies a very high
transitions rate between the two states, then we can say almost nothing
Hello all,
I am doing ancestral state estimation analyses with binary traits (presence
or absence of a behavior), and while doing so I ran into something that is
puzzling me.
For one particular behavior, the results look wrong to me, although R
doesn't report any errors during the analyses.
