Re: [R-sig-phylo] command for access posterior probabilities values of pie charts obtained from make.simmap

[Felipe Rossetto]

Thank you so much, Liam!


Em ter., 22 de ago. de 2023 às 12:27, Liam J. Revell 
escreveu:

> Dear Felipe.
>
> Assuming your "multiSimmap" object is called *maps*, you can try
> something like *summary(maps)$ace*. That should be a matrix with the
> posterior probabilities from stochastic mapping at all the nodes and tips
> of the tree.
>
> All the best, Liam
> Liam J. Revell
> Professor of Biology, University of Massachusetts Boston
> Web: http://faculty.umb.edu/liam.revell/
> Book: Phylogenetic Comparative Methods in R
> 
> (*Princeton University Press*, 2022)
>
>
> On 8/22/2023 11:22 AM, Felipe Rossetto wrote:
>
> CAUTION: EXTERNAL SENDER
>
> Dear all,
>
> I am trying to find an email where Liam showed a command that allows us to
> get the posterior probability values of pie charts at nodes of trees
> resulting from make.simmap computation, but I failed to find it. Does
> someone know this command? If yes, I am very grateful, if it is possible to
> share it.
>
> Thanks in advance
>
> Felipe
>
> [[alternative HTML version deleted]]
>
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Re: [R-sig-phylo] command for access posterior probabilities values of pie charts obtained from make.simmap

[Liam J. Revell]

Dear Felipe.

Assuming your "multiSimmap" object is called /maps/, you can try 
something like /summary(maps)$ace/. That should be a matrix with the 
posterior probabilities from stochastic mapping at all the nodes and 
tips of the tree.

All the best, Liam

Liam J. Revell
Professor of Biology, University of Massachusetts Boston
Web: http://faculty.umb.edu/liam.revell/
Book: Phylogenetic Comparative Methods in R 
 
(/Princeton University Press/, 2022)


On 8/22/2023 11:22 AM, Felipe Rossetto wrote:
> CAUTION: EXTERNAL SENDER
>
> Dear all,
>
> I am trying to find an email where Liam showed a command that allows us to
> get the posterior probability values of pie charts at nodes of trees
> resulting from make.simmap computation, but I failed to find it. Does
> someone know this command? If yes, I am very grateful, if it is possible to
> share it.
>
> Thanks in advance
>
> Felipe
>
>  [[alternative HTML version deleted]]
>
> ___
> R-sig-phylo mailing list -R-sig-phylo@r-project.org
> https://stat.ethz.ch/mailman/listinfo/r-sig-phylo
> Searchable archive athttp://www.mail-archive.com/r-sig-phylo@r-project.org/
[[alternative HTML version deleted]]

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[R-sig-phylo] command for access posterior probabilities values of pie charts obtained from make.simmap

[Felipe Rossetto]

Dear all,

I am trying to find an email where Liam showed a command that allows us to
get the posterior probability values of pie charts at nodes of trees
resulting from make.simmap computation, but I failed to find it. Does
someone know this command? If yes, I am very grateful, if it is possible to
share it.

Thanks in advance

Felipe

[[alternative HTML version deleted]]

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