[R-sig-phylo] Phylogenetic ANOVA or PGLS for categorical data?

2015-05-28 Thread Carlos H. Biagolini Junior
Hello everyone, I am comparing a categorical data vs. a continues data, but the continues data is a frequency of an observed parameter. I'm considering using phylogenetic ANOVA (Garland 1993) or PGLS for categorical data. But, I am not sure with one is more appropriate to my data. I would like

[R-sig-phylo] Phylogenetic ANOVA with multiple levels

2013-05-01 Thread Oscar Valverde
Hi all I am trying to analyze the integration between organs in root systems of angisoperms. My idea is testing if three different angiosperm groups integrate vascular tissue across root orders in the same way. So far I have been working with linear mixed effect models to test the idea, like in

[R-sig-phylo] Phylogenetic ANOVA

2010-07-26 Thread Alejandro Gonzalez V
Hello, Some colleagues and I are running some phylogenetic ANOVAS using the geiger package. In some of the analyses we get the same phylogentic p-value (very small p-value) even though the F-statistic differs between the two analyses, albeit it being relatively high in both instances. We were

Re: [R-sig-phylo] Phylogenetic ANOVA

2010-07-26 Thread Liam J. Revell
Just to clarify the point - the null distribution for the test-statistic (F) in this method is generated by Brownian motion simulation on the phylogeny. The P-value of the ANOVA is thus obtained by comparing the observed test-statistic to simulated test-statistics (for an arbitrarily large