Re: [R-sig-phylo] Computing the maximum agreement subtree for large non-binary trees

Perhaps I should have said. I'm well aware PAUP* 4.0b10 can calculate MAST for _small_ trees but it refuses to even try for moderate to large trees. Unless this has changed in the new PAUP I assume it's still a limitation? ``` paup> treedist metric=agreement; Error(#647): Trees must have

[R-sig-phylo] Computing the maximum agreement subtree for large non-binary trees

I'd like to compute a maximum agreement subtree (MAST) from two large (2269 taxa) unrooted, non-binary trees, each of identical taxa. It's simply a comparison of a reference tree to a computed tree. The data is here as simple Newick, no branch lengths:

Re: [R-sig-phylo] Computing the maximum agreement subtree for large non-binary trees

Hi, PAUP* calculates maximum agreement trees. cheers, Mark On Mon, Dec 21, 2015 at 9:42 AM, Ross Mounce wrote: > I'd like to compute a maximum agreement subtree (MAST) from two large > (2269 taxa) unrooted, non-binary trees, each of identical taxa. It's > simply a