Dear colleagues,
I would like to know if anyone is aware of a way to estimate the ancestral
states of a continuous character using Ornstein-Uhlenbeck
models that "allow the strength of selection and stochastic motion to vary
across selective regimes" (as implemented in the OUwie R package).
Hi Sebastian,
there is an implementation of the SH-test and SOWH-test in phangorn. Send
me an mail off list if you have problems using them.
Regards,
Klaus
On Jun 8, 2018 8:50 AM, "Sebastian Y. Müller" wrote:
Dear all,
I'd was wondering how to best perform a test to determine test
disagreement
Dear all,
I'd was wondering how to best perform a test to determine test
disagreement (congruence test) in R?
Additional information can be found in Planet et al (DOI:
10.1016/j.jbi.2005.08.008).
A common test seems the Shimodaira-Hasegawa Test (SH-test) which used to
be implemented in APE:
Hi Sebastian,
All the likelihood-based phylogenetic inference functions have been
removed from ape since version 2.4 (released in Oct 2009) because of the
(incomparably better) implementation in phangorn:
library(phangorn)
?SH.test
Best,
Emmanuel
Le 08/06/2018 à 14:50, Sebastian Y. Müller
