[R-sig-phylo] Model Selection and PGLS

2021-06-28 Thread Russell Engelman
Dear R-Sig-Phylo Mailing List, I ran into a rather unusual problem. I was doing an analysis using the mammal trees from Upham et al. (2019) downloaded off of the VertLife site. The model statistics for my data initially suggested that the OLS model was better supported than a PGLS model based on

Re: [R-sig-phylo] Model Selection and PGLS

2021-06-28 Thread Nathan Upham
Hi Russell and all: I’ll respond here since the answer is related to the intended purpose of the VertLife mammal trees — i.e, capturing full uncertainty in node ages and phylogenetic relationships was one of the motivators for building the mammal trees in the way we did. This approach

Re: [R-sig-phylo] Model Selection and PGLS

2021-06-28 Thread Russell Engelman
Dear Dr. Upham (and All), Please don't take my initial message the wrong way, this is not meant to be a dig at your 2019 study. I don’t think this is due to the birth-death tree specifically but would be present in any study where there are multiple phylogenetic trees to choose from or some