hylo(x, phy)`, it is always a vector,
even if original x is a 1-column matrix, so that ncol(x) is NULL. Probably if
there is a catch for when x is a vector to set p=1, then it would fix the
problem, though I haven’t tested whether there are any further problems that
come up.
All of the best,
Eliz
em together. Less desirable would be if the
output of plot.phylo returned the information in ‘L’ that is saved in the
.PlotPhyloEnv, then I could at least recreate a more stable version of my
little function above.
(it would also be nice if the legend of the colors was in some reasonable
sorted order, i.e. 1,2,3, and not in the arbitrary order)
Thanks,
Elizabeth Purdom
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rsion I would put in). Do I need to be
running a development version of R to get the newest versions of ape?
Thanks for any help,
Elizabeth Purdom
PS Here is my sessionInfo:
> sessionInfo()
R version 3.4.2 (2017-09-28)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: OS X El Capitan 1
pload a Windows build
> in a few hours. The NEWS file on ape-package.ird.fr has been updated.
>
> Best,
>
> Emmanuel
>
> Le 17/10/2017 à 12:11, Elizabeth Purdom a écrit :
>> Hello,
>> I currently have version 4.1 of ape installed on my computer (Mac OS X, R
>>
=
> downloaded 737 KB
>
> [,1] [,2]
> [1,] "ape" "./ape_4.9.tar.gz"
>
> The Win build is also available. The NEWS file is here:
>
> http://ape-package.ird.fr/NEWS
>
> Best,
>
> Emmanuel
>
> Le 17/10/2017 à 15:52, E
these calculations
so that in my next call I can change the x.lim options so the tree only takes
up a fraction of the plot, so I need to reset the par, etc., and not just draw
on the original coordinates set up by the blank plot)
Thank you,
Elizabeth Purdom
should return 2
>
> All the best, Liam
>
> Liam J. Revell
> Associate Professor, University of Massachusetts Boston
> Profesor Asistente, Universidad Católica de la Ssma Concepción
> web: http://faculty.umb.edu/liam.revell/, http://www.phytools.org
>
> Academic Directo
that output to be printed for users of
my function).
I see the package `paleotree` has ported some of those checks into a test, so
I’m guessing such a function doesn’t exist in ape — and I don’t really want a
dependency on another package just for these checks.
Thanks,
Elizabeth Purdom
