Re: [R-sig-phylo] breaking up phylogeny figure

2012-11-14 Thread Liam J. Revell 

Hi Ben.

You've probably found a way to do this already (since I see that your 
original message was sent in early October), most likely outside of R, 
but I just developed and posted an R function for this which I will add 
to the next update of phytools. I have described this function, along 
with links to the code, on my blog: 
http://blog.phytools.org/2012/11/function-to-break-up-plotted-tree-into.html


All the best, Liam

Liam J. Revell, Assistant Professor of Biology
University of Massachusetts Boston
web: http://faculty.umb.edu/liam.revell/
email: liam.rev...@umb.edu
blog: http://phytools.blogspot.com

On 10/3/2012 12:45 PM, Ben Weinstein wrote:

Hi all,

I'm wondering if there is a way to plot a phylogeny in R that is broken up
and displayed side by side to condense space. I've made a backbone in R
that i'd like to make into a figure, but it is too tall. If this isn't the
write setup, could someone suggest what program (and format for me to
write.tree) from R. I am using windows, in terms of potential third part
programs.

Thanks,

ben



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Re: [R-sig-phylo] breaking up phylogeny figure

2012-10-12 Thread Emmanuel Paradis 

Hi Ben,

You should be able to play with extract.clade() and drop.tip(): they 
both have an option 'interactive' so you may click on the plotted 
backbon tree to build your subtrees.


Best,

Emmanuel

Ben Weinstein wrote on 03/10/2012 23:45:

Hi all,

I'm wondering if there is a way to plot a phylogeny in R that is broken up
and displayed side by side to condense space. I've made a backbone in R
that i'd like to make into a figure, but it is too tall. If this isn't the
write setup, could someone suggest what program (and format for me to
write.tree) from R. I am using windows, in terms of potential third part
programs.

Thanks,

ben


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