Re: [R-sig-phylo] fatal error plotting trees

Hi, This kind of issue was reported some time ago and there is an item in ape's FAQ: http://ape-package.ird.fr/ape_faq.html#Bayestrees But your situation seems a bit different. You may also check the tree with checkValidPhylo() to have a diagnostic of what's wrong. Best, Emmanuel Le

Re: [R-sig-phylo] fatal error plotting trees

...it turns out the fatal error was caused by taxon numbering issues - basically, my tree was stored in nexus format and my taxon numbering under "translate" in the trees block were not continuous - I think some were pruned but the numbering still reflected those in the full original tree. I got

Re: [R-sig-phylo] fatal error plotting trees

Manabu- Can you give us a reproducible example? Is it as simple as plotting any tree does it or is it only particular trees? Cheers, -Dave On Fri, Oct 28, 2016 at 7:53 AM, Manabu Sakamoto wrote: > Dear List, > > I'm getting fatal errors when plotting phylo objects,