Re: [Rdkit-devel] Beta of Q1 2016 release now up

2016-04-13 Thread Greg Landrum
Hi Gianluca, On Tue, Apr 12, 2016 at 1:09 PM, Gianluca Sforna wrote: > > But no joy still > > > [ 36%] Building CXX object > Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o > cd > /builddir/build/BUILD/rdkit-Release_2016_03_1b1/python2/Code/GraphMol/SmilesParse > && /

Re: [Rdkit-devel] Beta of Q1 2016 release now up

2016-04-13 Thread Gianluca Sforna
I bisected with git the issue, it popped up after commit b76d1a9 last december. I know almost nothing about flex & bison, but I noticed a suspicious change in the diff, and indeed the following patch fixes the build: diff --git a/Code/GraphMol/SmilesParse/smiles.ll b/Code/GraphMol/SmilesParse/sm

Re: [Rdkit-devel] Beta of Q1 2016 release now up

2016-04-13 Thread Greg Landrum
Wow, that's a "typing in the wrong buffer" bug. Great catch. I will check in the fix in the next couple of minutes. On Wed, Apr 13, 2016 at 12:09 PM, Gianluca Sforna wrote: > I bisected with git the issue, it popped up after commit b76d1a9 last > december. > > I know almost nothing about flex &

Re: [Rdkit-devel] Beta of Q1 2016 release now up

2016-04-13 Thread Gianluca Sforna
On Wed, Apr 13, 2016 at 12:27 PM, Greg Landrum wrote: > Wow, that's a "typing in the wrong buffer" bug. > Great catch. :) Another couple points. I noticed the RDKit_Overview.pdf file is not there anymore. Was it integrated in the main manual, moved somewhere else or just removed? Regarding Post

Re: [Rdkit-devel] Beta of Q1 2016 release now up

2016-04-13 Thread Greg Landrum
On Wed, Apr 13, 2016 at 8:43 PM, Gianluca Sforna wrote: > On Wed, Apr 13, 2016 at 12:27 PM, Greg Landrum > wrote: > > Wow, that's a "typing in the wrong buffer" bug. > > Great catch. > > :) > > Another couple points. > I noticed the RDKit_Overview.pdf file is not there anymore. Was it > integrat