Re: [Rdkit-discuss] tautomers in rdkit

2017-04-18 Thread Peter S. Shenkin
;> >>> When replying, please edit your Subject line so it is more specific >>> than "Re: Contents of Rdkit-discuss digest..." >>> >>> >>> Today's Topics: >>> >>>1. tautomers in rdkit (MARIA BRANDL) >>>2. Re: t

Re: [Rdkit-discuss] tautomers in rdkit

2017-04-18 Thread David Cosgrove
f Rdkit-discuss digest..." >> >> >> Today's Topics: >> >>1. tautomers in rdkit (MARIA BRANDL) >>2. Re: tautomers in rdkit (Peter S. Shenkin) >>3. official Tripos MOL2 file format PDF document (Francois BERENGER) >> >> >

Re: [Rdkit-discuss] tautomers in rdkit

2017-04-17 Thread JW Feng
> > Message: 1 > Date: Tue, 11 Apr 2017 06:43:39 +0000 (UTC) > From: MARIA BRANDL <m.bra...@btinternet.com> > Subject: [Rdkit-discuss] tautomers in rdkit > To: "rdkit-discuss@lists.sourceforge.net" > <rdkit-discuss@lists.sourceforge.net> > Message-ID: <1522

Re: [Rdkit-discuss] tautomers in rdkit

2017-04-11 Thread Peter S. Shenkin
Just from the slides, it's not clear that Roger had a solution; the slides seem to just suggest an approach. Am I missing something here? That is, he defined the invariants that all tautomers of a compound have to share and expressed it as a SMARTS + constraints; but I didn't see that he provided

[Rdkit-discuss] tautomers in rdkit

2017-04-11 Thread MARIA BRANDL
Dear all, Is there going to be an attempt at coding Roger Sayle's  "Alternative Approach" to tautomers described inRDKit: Six Not-So-Easy Pieces [RDKit UGM 2016] into RDKit ? I have managed to get reasonable tautomers out of Resonance.cpp using: suppl =