Hi Greg,
I have tried to install the latest RDKit on a freshly installed Ubuntu
10.10.
After installing python-dev, sqlite3, numpy, bison, flex AND THE BOOST
LIBRARIES VIA APT (boost 1.42), I additionally installed boost 1.4.2 in
/opt/boost_1_42_0.
During the cmake step flex and bison were
HI Markus,
On Mon, Nov 15, 2010 at 9:51 AM, Markus Kossner
m.koss...@googlemail.com wrote:
Hi Greg,
I have tried to install the latest RDKit on a freshly installed Ubuntu
10.10.
After installing python-dev, sqlite3, numpy, bison, flex AND THE BOOST
LIBRARIES VIA APT (boost 1.42), I
Hi Greg,
exactly that was the case.
RDKit nicely installs now!
Cheers,
Markus
On 11/15/2010 10:05 AM, Greg Landrum wrote:
HI Markus,
On Mon, Nov 15, 2010 at 9:51 AM, Markus Kossner
m.koss...@googlemail.com wrote:
Hi Greg,
I have tried to install the latest RDKit on a freshly installed
I've been working to build RDKit on Centos 5, and I'm hitting a very common
error. Unfortunately, none of the standard fixes have helped.
Details:
The error that I'm seeing is this:
[ 82%] Building CXX object
Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o
[ 83%] Building CXX
Have you tried to remove the CMake cache file before rerun cmake?
rm -f CMakeCache.txt
After rerun cmake, take a look at that file again and make sure things like
Boost_INCLUDE_DIR and Boost_LIBRARY_DIRS all point to /usr/local/include and
/usr/local/lib, etc.
Eddie
On Nov 15, 2010, at
Yep, I've defintely done that. I've even gone so far as to wipe out the
directory entirely and start with a fresh RDKit directory. I also looked
into the cache file and seen that the library directories appear to be set
as /usr/local/lib and /user/local/lib64, but one the error occurs, it refers
It must be something in the release version of RDKit. I just grabbed the
SVN version, put it in the same location, followed the same procedures, and
it has just compiled fine without any other changes on my part.
Greg - any ideas what the difference is here? Not that it matters given
that the
Make sure /usr/local/lib appears before /usr/lib64 in your LD_LIBRARY_PATH. It
seems python import loads the system boost rather than your custom boost.
-Eddie
On Nov 15, 2010, at 2:44 PM, Robert DeLisle wrote:
It must be something in the release version of RDKit. I just grabbed the SVN
Yes, that is also true.
The error in my most recent messages stems from the default build of Python
supporst Unicode UCS2, but apparently boost expects UCS4. A rebuild of
Python with UCS4 enabled fixed that problem.
Now I get a similar error related to Py_InitModule4 not being defined. From
Hi Kirk,
On Mon, Nov 15, 2010 at 11:44 PM, Robert DeLisle rkdeli...@gmail.com wrote:
It must be something in the release version of RDKit. I just grabbed the
SVN version, put it in the same location, followed the same procedures, and
it has just compiled fine without any other changes on my
Kirk,
On Tue, Nov 16, 2010 at 12:38 AM, Robert DeLisle rkdeli...@gmail.com wrote:
Yes, that is also true.
The error in my most recent messages stems from the default build of Python
supporst Unicode UCS2, but apparently boost expects UCS4. A rebuild of
Python with UCS4 enabled fixed that
No, I made sure to include the address-model=64 switch to bjam.
Tomorrow when I get in I'll update the thread with all the steps I've
followed.
-Kirk
On Nov 15, 2010 9:52pm, Greg Landrum greg.land...@gmail.com wrote:
Kirk,
On Tue, Nov 16, 2010 at 12:38 AM, Robert DeLisle
12 matches
Mail list logo
