[Rdkit-discuss] 'SDWriter' object has no attribute 'close
Hello all, I have I little problem with RDKIT( I hope :D) My program don't arrive to close the SDwriter whereas I put the command writer.close() and Chem.SDWriter.close() in the end of programm I just let the part of the code that is import for understand the problem and the error. I have the error when the program has finished to read the file Tks C from sys import * #from ChemScript11 import * from cinfony import rdk from rdkit import Chem import time reader1 = Chem.SDMolSupplier(sys.argv[0]) writer = Chem.SDWriter(sys.argv[1]) z = 0 for mol in reader1: [Blablablablabla ( It's to simulate a code)] writer.write(mol) writer.close() reader1.close() Chem.SDWriter.close() Traceback (most recent call last): File C:\Scripttravail\supermain.py, line 18, in module exec(file.read()) File string, line 51, in module AttributeError: 'SDWriter' object has no attribute 'close ** DISCLAIMER This email and any files transmitted with it, including replies and forwarded copies (which may contain alterations) subsequently transmitted from Firmenich, are confidential and solely for the use of the intended recipient. The contents do not represent the opinion of Firmenich except to the extent that it relates to their official business. ** -- ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo___ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
Re: [Rdkit-discuss] 'SDWriter' object has no attribute 'close
Cedric MORETTI wrote: Hello all, I have I little problem with RDKIT( I hope :D) My program don’t arrive to close the SDwriter whereas I put the command “writer.close()” and Chem.SDWriter.close() in the end of programm I just let the part of the code that is import for understand the problem and the error. I have the error when the program has finished to read the file Tks C from sys import * #from ChemScript11 import * from cinfony import rdk from rdkit import Chem import time reader1 = Chem.SDMolSupplier(sys.argv[0]) writer = Chem.SDWriter(sys.argv[1]) z = 0 for mol in reader1: “ [Blablablablabla ( It’s to simulate a code)] writer.write(mol) writer.close() reader1.close() Chem.SDWriter.close() Traceback (most recent call last): File C:\Scripttravail\supermain.py, line 18, in module exec(file.read()) File string, line 51, in module AttributeError: 'SDWriter' object has no attribute 'close ** DISCLAIMER This email and any files transmitted with it, including replies and forwarded copies (which may contain alterations) subsequently transmitted from Firmenich, are confidential and solely for the use of the intended recipient. The contents do not represent the opinion of Firmenich except to the extent that it relates to their official business. ** -- ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo ___ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-discuss Hi Cedric, the Chem.SDWriter Object does not need to be closed, does it? It is automatically closed at the end of your program. It doesn't even have a method that is named 'close()' like the ones you might know from python text file I/O objects. This is what the Traceback error complains when it says : -AttributeError: 'SDWriter' object has no attribute 'close' So you should go well with simply deleting the three lines at the end of your script that give the .close() commands. Hope this helps, Markus -- ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo ___ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
Re: [Rdkit-discuss] 'SDWriter' object has no attribute 'close
Markus thank you, you responded to my problem. I had read the manual RDKIT and I could not see where you need to close SDWRITER. So I do not understand my error. C -Original Message- From: markus kossner [mailto:m.koss...@tu-bs.de] Sent: jeudi, 10. juin 2010 15:43 To: Cedric MORETTI Cc: rdkit-discuss@lists.sourceforge.net Subject: Re: [Rdkit-discuss] 'SDWriter' object has no attribute 'close Cedric MORETTI wrote: Hello all, I have I little problem with RDKIT( I hope :D) My program don't arrive to close the SDwriter whereas I put the command writer.close() and Chem.SDWriter.close() in the end of programm I just let the part of the code that is import for understand the problem and the error. I have the error when the program has finished to read the file Tks C from sys import * #from ChemScript11 import * from cinfony import rdk from rdkit import Chem import time reader1 = Chem.SDMolSupplier(sys.argv[0]) writer = Chem.SDWriter(sys.argv[1]) z = 0 for mol in reader1: [Blablablablabla ( It's to simulate a code)] writer.write(mol) writer.close() reader1.close() Chem.SDWriter.close() Traceback (most recent call last): File C:\Scripttravail\supermain.py, line 18, in module exec(file.read()) File string, line 51, in module AttributeError: 'SDWriter' object has no attribute 'close ** DISCLAIMER This email and any files transmitted with it, including replies and forwarded copies (which may contain alterations) subsequently transmitted from Firmenich, are confidential and solely for the use of the intended recipient. The contents do not represent the opinion of Firmenich except to the extent that it relates to their official business. ** -- ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo ___ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-discuss Hi Cedric, the Chem.SDWriter Object does not need to be closed, does it? It is automatically closed at the end of your program. It doesn't even have a method that is named 'close()' like the ones you might know from python text file I/O objects. This is what the Traceback error complains when it says : -AttributeError: 'SDWriter' object has no attribute 'close' So you should go well with simply deleting the three lines at the end of your script that give the .close() commands. Hope this helps, Markus ** DISCLAIMER This email and any files transmitted with it, including replies and forwarded copies (which may contain alterations) subsequently transmitted from Firmenich, are confidential and solely for the use of the intended recipient. The contents do not represent the opinion of Firmenich except to the extent that it relates to their official business. ** -- ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo ___ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
