Re: [Rdkit-discuss] Issue with the latest RDKit DB build

[Dimitri Maziuk]

PS the real question is why you're trying to run psql built with a newer
toolset when there's 2 perfectly good ones available: one from the
distro vendor and one from postgres repos.

-- 
Dimitri Maziuk
Programmer/sysadmin
BioMagResBank, UW-Madison -- http://www.bmrb.wisc.edu





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Re: [Rdkit-discuss] Issue with the latest RDKit DB build

[Dimitri Maziuk]

On 12/29/2017 01:57 PM, Paul Emsley wrote:
> On 29/12/2017 19:01, Drew Gibson via Rdkit-discuss wrote:

>> psql: error while loading shared libraries: libncursesw.so.6: cannot
>> open shared object file: No such file or directory
> 
> install the ncurses-libs package (I have
> ncurses-libs-6.0-8.20170212.fc26.x86_64 on fedora)

On centos 7 that's not gonna get you libncursesw.so.6:

$ rpm -q -l ncurses-libs
/usr/lib64/libform.so.5
/usr/lib64/libform.so.5.9
/usr/lib64/libformw.so.5
/usr/lib64/libformw.so.5.9
/usr/lib64/libmenu.so.5
/usr/lib64/libmenu.so.5.9
/usr/lib64/libmenuw.so.5
/usr/lib64/libmenuw.so.5.9
/usr/lib64/libncurses++.so.5
/usr/lib64/libncurses++.so.5.9
/usr/lib64/libncurses++w.so.5
/usr/lib64/libncurses++w.so.5.9
/usr/lib64/libncurses.so.5
/usr/lib64/libncurses.so.5.9
/usr/lib64/libncursesw.so.5
/usr/lib64/libncursesw.so.5.9
/usr/lib64/libpanel.so.5
/usr/lib64/libpanel.so.5.9
/usr/lib64/libpanelw.so.5
/usr/lib64/libpanelw.so.5.9
/usr/lib64/libtic.so.5
/usr/lib64/libtic.so.5.9
/usr/lib64/libtinfo.so.5
/usr/lib64/libtinfo.so.5.9


-- 
Dimitri Maziuk
Programmer/sysadmin
BioMagResBank, UW-Madison -- http://www.bmrb.wisc.edu



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Re: [Rdkit-discuss] Issue with the latest RDKit DB build

[Markus Sitzmann]

I have the problem, too, on Debian stretch


-
|  Markus Sitzmann
|  markus.sitzm...@gmail.com

> On 29. Dec 2017, at 20:01, Drew Gibson via Rdkit-discuss 
>  wrote:
> 
> Hello, and compliments of the season to you, RDKitters :)
> 
> I'm having trouble getting the conda build of the DB package 
> (rdkit-postgresql95) working.
> 
> The issue I'm having occurs when trying to initialise the rdkit DB extension 
> on a newly created DB, eg...
> 
> createdb emolecules 
> psql -c 'create extension rdkit' emolecules which will give me the 
> error...
> 
> psql: error while loading shared libraries: libncursesw.so.6: cannot open 
> shared object file: No such file or directory
> 
> I am getting the same error on both Ubuntu 16.04 LTS and in CentOS7 (latest, 
> running in VirtualBox for now).
> 
> I have successfully installed and used previous versions of the DB 
> (rdkit-postgresql), and currently have this working on Ubuntu.
> 
> Any suggestions to getting the newest version working ? 
> 
> Cheers,  Drew
> --
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Re: [Rdkit-discuss] Issue with the latest RDKit DB build

[Paul Emsley]

On 29/12/2017 19:01, Drew Gibson via Rdkit-discuss wrote:

Hello, and compliments of the season to you, RDKitters :)

I'm having trouble getting the conda build of the DB package 
(rdkit-postgresql95) working.

The issue I'm having occurs when trying to initialise the rdkit DB extension on 
a newly created DB, eg...

createdb emolecules
psql -c 'create extension rdkit' emolecules         which will give me the 
error...

psql: error while loading shared libraries: libncursesw.so.6: cannot open shared object file: No such file 
or directory


install the ncurses-libs package (I have 
ncurses-libs-6.0-8.20170212.fc26.x86_64 on fedora)






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[Rdkit-discuss] Issue with the latest RDKit DB build

[Drew Gibson via Rdkit-discuss]

Hello, and compliments of the season to you, RDKitters :)

I'm having trouble getting the conda build of the DB package (
rdkit-postgresql95) working.

The issue I'm having occurs when trying to initialise the rdkit DB
extension on a newly created DB, eg...

createdb emolecules
psql -c 'create extension rdkit' emolecules which will give me the
error...

psql: error while loading shared libraries: libncursesw.so.6: cannot open
shared object file: No such file or directory

I am getting the same error on both Ubuntu 16.04 LTS and in CentOS7
(latest, running in VirtualBox for now).

I have successfully installed and used previous versions of the DB (
rdkit-postgresql), and currently have this working on Ubuntu.

Any suggestions to getting the newest version working ?

Cheers,  Drew
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