Hi Eddie,
I edited the rdkit formula but it still throws a error …
cmake -DCMAKE_INSTALL_PREFIX='/usr/local/Cellar/rdkit/2012.09.1'
-DCMAKE_BUILD_TYPE=None -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev
-DRDK_INSTALL_INTREE=OFF -DR
used as include directory in directory
Hi,
The latest rdkit homebrew formula contains a patch that fixes an issue of the
latest Q3 release. Unfortunately, the patch is not compatible with the SVN
version. What you need to do is remove the patch manually by running:
$ brew edit rdkit
In the editor, remove anything after line 100.
Hi Greg,
I built boost 1.49 from source and tried again. There is now a similar
error but elsewhere:
44%] Building CXX object
Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o
Linking CXX shared library ../../../lib/libSmilesParse.dylib
ld: warning: path
Hello again,
Success at last! I managed to build rdkit using brew and boost 1.49.
I think the cause of the problem was a strange combination of Mountain
Lion, boost 1.51 and not up-to-date rdkit svn repo in HomeBrew.
So to summarise:
brew update
brew uninstall boost
brew versions boost
cd
On Wed, Oct 10, 2012 at 2:51 PM, George Papadatos gpapada...@gmail.com wrote:
Hello again,
Success at last! I managed to build rdkit using brew and boost 1.49.
I think the cause of the problem was a strange combination of Mountain Lion,
boost 1.51 and not up-to-date rdkit svn repo in
Hi James,
You're right. I checked out the true HEAD which is 2234 but it still
failed!
This is the make log:
MS-Verdun:build georgep$ cmake -D PYTHON_LIBRARY=/${PYTHON_ROOT}/Python
-DPYTHON_INCLUDE_DIR=${PYTHON_ROOT}/Headers .. 21 | tee cmake.log
-- The C compiler identification is GNU 4.2.1
--
homebrew is using the old svn repo?
On 09/10/12 22:33, James Swetnam wrote:
George-
My templating fix was submitted as 2155, and HEAD in SVN is at 2234.
I'm not terribly familiar with homebrew, or why it thinks 2148 is HEAD
James
On Tue, Oct 9, 2012 at 2:27 PM, George Papadatos
My apology. The homebrew formula was using the old svn repo. (I thought
sourceforge would do a redirect automatically from the old repo.) It has been
fixed. Try these and see if it works:
brew untap edc/homebrew-rdkit
brew tap edc/homebrew-rdkit
brew rm rdkit
brew fetch --HEAD rdkit --force -v
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