Re: [Rdkit-discuss] a documentation experiment

2011-08-09 Thread Paul . Czodrowski
Dear Greg, very neat nifty - I already like it a lot! Paul I'd be very happy for feedback on what people think of the new format. -greg This message and any attachment are confidential and may be privileged or otherwise protected from disclosure. If you are not the intended recipient,

Re: [Rdkit-discuss] SDF with errors (sanifix and kekulize errors)

2011-08-09 Thread JP
I would have liked to include James Davidson; since I think sanifix3.py is his code... but the emails on pages http://www.mail-archive.com/rdkit-discuss@lists.sourceforge.net/msg01186.html and http://www.mail-archive.com/rdkit-discuss@lists.sourceforge.net/msg01162.html are quite sensibly spam

Re: [Rdkit-discuss] SDF with errors (sanifix and kekulize errors)

2011-08-09 Thread Greg Landrum
On Tue, Aug 9, 2011 at 1:53 PM, JP jeanpaul.ebe...@inhibox.com wrote: I have been using sanifix3.py to get around the Can't kekulize mol errors...  I have a number of molecules which still give me this error (~1000 mols) even after running the sanifix script.  I am attaching a sanifix3.py