Re: [Rdkit-discuss] UGM 2017 details

2017-06-13 Thread Colin Bournez
Hi all and more particularly the organizers of UGM 2017, I have a question concerning the hackaton, does it consist in defined groups in which you work all day on the same subject or will it be possible to switch groups and work in different subject? And, my second question : do we need to be

Re: [Rdkit-discuss] UGM 2017 details

2017-06-13 Thread Greg Landrum
Hi Colin, On Tue, Jun 13, 2017 at 3:54 PM, Colin Bournez < colin.bour...@univ-orleans.fr> wrote: > > I have a question concerning the hackaton, does it consist in defined > groups in which you work all day on the same subject or will it be possible > to switch groups and work in different subject

Re: [Rdkit-discuss] UGM 2017 details

2017-06-13 Thread Colin Bournez
Yes thanks for this complete answer. Colin Bournez On 13/06/17 16:27, Greg Landrum wrote: Hi Colin, On Tue, Jun 13, 2017 at 3:54 PM, Colin Bournez mailto:colin.bour...@univ-orleans.fr>> wrote: I have a question concerning the hackaton, does it consist in defined groups in which yo

[Rdkit-discuss] starting 3D structures in conformer generation

2017-06-13 Thread gosia olejniczak
dear RDKit experts, i have a question about conformer generation, maybe best posed on an example: i'm working with macrocycles which have few amide groups. As in each amide group H(-N) and O(=C) atoms can have two positions with respect to a rigid part of a molecule (amide groups are direct neigh

[Rdkit-discuss] how to append conformer number to molecule name in SDF output file?

2017-06-13 Thread Francois BERENGER
Hello, I am generating conformers. When I write them out, I'd like that they are named like this: molName_001 molName_002 ... So that, down the line, I know with which conformer of which molecule I am working with. So: "parent" molecule name followed by one '_' then the conformer Id in a fixe