candtalan, what version of the client are you using?
$ dpkg -l ubuntuone-client |cat
So, there are two problems:
It's possible for the UI to tell counts wrong.
There may be a sync problem.
** Also affects: ubuntuone-client
Importance: Undecided
Status: New
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ubuntuone is not updating all files
https://bugs.launchpad.net/bugs/448093
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