Hi Jim,

I take it from the screen shot that you're running Apollo on Mac OS X,
right?  It does sound to me as if your custom configuration files might
have gotten messed up somehow.  The easiest solution is to clear up your
Apollo configuration files.  In a terminal window, type the following:

rm ~/.apollo/*.style ~/.apollo/*.tiers

Let me know whether or not that solves your issues.

Cheers,
Ed

<quote>
Date: Wed, 1 Apr 2009 12:20:32 -0400
From: Sandoz <[email protected]>
To: [email protected]
Subject: Display Colors

Greetings!
        I have a phage genome that my class is annotating. The colors of the
display have gotten screwed up. When I open my file on another machine,
everything is peachy keen. I sure don't remember changing any settings.
        The colors of the gene predictions by Glimmer and GeneMark have
disappeared. Blank colorless boxes are what is visible now. This makes it
difficult to point out 'stuff' to the students. Screen shot attached.
        Is there a way to get the colors back?
        Thanks.
        Jim Sandoz
        Sandoz
[email protected]
</quote>
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