Messages by Date
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2010/07/18
RE: [aroma.affymetrix] Analysis of GenomeWideSNP6.0 data
Ajanthah Sangaralingam
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2010/07/18
Re: [aroma.affymetrix] Problem with extracting subset of samples for 500K
Henrik Bengtsson
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2010/07/18
Re: [aroma.affymetrix] Analysis of GenomeWideSNP6.0 data
Henrik Bengtsson
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2010/07/16
[aroma.affymetrix] Analysis of GenomeWideSNP6.0 data
Ajanthah Sangaralingam
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2010/07/15
[aroma.affymetrix] Problem with extracting subset of samples for 500K
biobee
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2010/07/15
Re: [aroma.affymetrix] attach two data frames
Pierre Neuvial
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2010/07/15
[aroma.affymetrix] attach two data frames
Liang Cheng
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2010/07/12
Re: [aroma.affymetrix] problem with CDF file
Henrik Bengtsson
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2010/07/12
[aroma.affymetrix] problem with CDF file
Zsuzsa
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2010/07/07
Re: [aroma.affymetrix] uncomplete extractDataFrame()
Pierre Neuvial
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2010/07/07
Re: [aroma.affymetrix] uncomplete extractDataFrame()
Pierre Neuvial
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2010/07/07
Re: [aroma.affymetrix] ArrayExplorer: Error in readCelHeader(pathname)
Richard Beyer
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2010/07/06
Re: [aroma.affymetrix] Aroma Affymetrix package update problem
Pierre Neuvial
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2010/07/06
[aroma.affymetrix] Aroma Affymetrix package update problem
Fong
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2010/07/06
Re: [aroma.affymetrix] Error in using the extract() function
Henrik Bengtsson
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2010/07/06
Re: [aroma.affymetrix] ArrayExplorer: Error in readCelHeader(pathname)
Henrik Bengtsson
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2010/07/06
Re: [aroma.affymetrix] Re: ArrayExplorer issue
Henrik Bengtsson
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2010/07/02
[aroma.affymetrix] Re: ArrayExplorer issue
larryns
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2010/07/02
Re: [aroma.affymetrix] Microsoft Visual C++ Runtime Library
Liang Cheng
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2010/07/02
[aroma.affymetrix] HuEx Transcript Annotation with biomaRt
Rashid, Mamunur
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2010/07/02
Re: [aroma.affymetrix] uncomplete extractDataFrame()
Pierre Neuvial
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2010/07/02
[aroma.affymetrix] ArrayExplorer issue
larryns
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2010/07/01
Re: [aroma.affymetrix] Problem with GLAD on linux cluster
Henrik Bengtsson
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2010/07/01
Re: Where can I download the CDF file? (Was: Re: [aroma.affymetrix] problem with Arguments$getInstanceOf(dataSet, "SnpChipEffectSet"))
Henrik Bengtsson
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2010/07/01
Re: How to figure out the chip type of unknown CEL files (Was: Re: [aroma.affymetrix] problem with Arguments$getInstanceOf(dataSet, "SnpChipEffectSet"))
Henrik Bengtsson
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2010/07/01
Re: [aroma.affymetrix] Microsoft Visual C++ Runtime Library
Henrik Bengtsson
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2010/07/01
Re: [aroma.affymetrix] Microsoft Visual C++ Runtime Library
Liang Cheng
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2010/07/01
Re: [aroma.affymetrix] Microsoft Visual C++ Runtime Library
Pierre Neuvial
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2010/07/01
Re: [aroma.affymetrix] Microsoft Visual C++ Runtime Library
Liang Cheng
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2010/07/01
Re: [aroma.affymetrix] Microsoft Visual C++ Runtime Library
Pierre Neuvial
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2010/07/01
[aroma.affymetrix] uncomplete extractDataFrame()
EmilieT
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2010/06/30
[aroma.affymetrix] Error in using the extract() function
Johan Staaf
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2010/06/29
[aroma.affymetrix] Microsoft Visual C++ Runtime Library
Liang Cheng
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2010/06/29
[aroma.affymetrix] Problem with GLAD on linux cluster
cstratowa
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2010/06/29
[aroma.affymetrix] Re: Diskussion zu export-to-bioconductor
mamun
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2010/06/29
[aroma.affymetrix] Diskussion zu export-to-bioconductor
pbernin
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2010/06/25
Re: [aroma.affymetrix] problem with Arguments$getInstanceOf(dataSet, "SnpChipEffectSet")
Liang Cheng
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2010/06/25
Re: [aroma.affymetrix] problem with Arguments$getInstanceOf(dataSet, "SnpChipEffectSet")
Liang Cheng
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2010/06/23
Re: [aroma.affymetrix] problem with Arguments$getInstanceOf(dataSet, "SnpChipEffectSet")
Henrik Bengtsson
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2010/06/23
Re: [aroma.affymetrix] Problems with Affymetrix 250K Sty2 arrays after CRMAv2 analysis
Johan Staaf
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2010/06/23
Re: [aroma.affymetrix] Problems with Affymetrix 250K Sty2 arrays after CRMAv2 analysis
Henrik Bengtsson
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2010/06/23
Re: [aroma.affymetrix] Problems with Affymetrix 250K Sty2 arrays after CRMAv2 analysis
Henrik Bengtsson
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2010/06/23
RE: [aroma.affymetrix] Residual plot vertical separation
Rashid, Mamunur
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2010/06/23
[aroma.affymetrix] problem with Arguments$getInstanceOf(dataSet, "SnpChipEffectSet")
mortiz
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2010/06/22
Re: [aroma.affymetrix] How to convert a "xxx.CEL" file to a "yyy.txt" file?
Henrik Bengtsson
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2010/06/22
Re: [aroma.affymetrix] How to convert a "xxx.CEL" file to a "yyy.txt" file?
Liang Cheng
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2010/06/22
Re: [aroma.affymetrix] How to convert a "xxx.CEL" file to a "yyy.txt" file?
Henrik Bengtsson
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2010/06/22
Re: [aroma.affymetrix] How to convert a "xxx.CEL" file to a "yyy.txt" file?
Liang Cheng
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2010/06/22
Re: [aroma.affymetrix] How to convert a "xxx.CEL" file to a "yyy.txt" file?
Henrik Bengtsson
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2010/06/22
[aroma.affymetrix] How to convert a "xxx.CEL" file to a "yyy.txt" file?
Viking
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2010/06/22
Re: [aroma.affymetrix] Error in AllelicCrosstalkCalibration
Henrik Bengtsson
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2010/06/22
[aroma.affymetrix] Error in AllelicCrosstalkCalibration
JR
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2010/06/22
Re: [aroma.affymetrix] Residual plot vertical separation
Henrik Bengtsson
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2010/06/21
Re: [aroma.affymetrix] an error on locating cdf
Henrik Bengtsson
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2010/06/21
[aroma.affymetrix] an error on locating cdf
Albyn
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2010/06/17
[aroma.affymetrix] Re: CRMA v2 errors
Smaug72
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2010/06/09
Re: [aroma.affymetrix] Re: Problem with Total Copy Number Vignette
Henrik Bengtsson
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2010/06/09
Re: [aroma.affymetrix] Re: Mouse diversity array --building the required files for aroma.affymetrix UGP, UFL
Henrik Bengtsson
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2010/06/09
[aroma.affymetrix] Re: Mouse diversity array --building the required files for aroma.affymetrix UGP, UFL
Ivanek, Robert
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2010/06/07
[aroma.affymetrix] Re: Problem with Total Copy Number Vignette
Jack
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2010/06/07
Re: [aroma.affymetrix] Error in sort.list(pairsToBuild) during AllelicCrosstalkCalibration
Henrik Bengtsson
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2010/06/07
Re: [aroma.affymetrix] re: base pair normalization in CRMAv2
Henrik Bengtsson
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2010/06/07
Re: [aroma.affymetrix] Problem with Total Copy Number Vignette
Henrik Bengtsson
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2010/06/07
[aroma.affymetrix] Re: Error during Total copy number analysis using CRMA v1
Jack
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2010/06/07
Re: [aroma.affymetrix] Error during Total copy number analysis using CRMA v1
Henrik Bengtsson
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2010/06/07
[aroma.affymetrix] Error in sort.list(pairsToBuild) during AllelicCrosstalkCalibration
k o
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2010/06/07
Re: [aroma.affymetrix] re: base pair normalization in CRMAv2
seth redmond
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2010/06/07
[aroma.affymetrix] Problem with Total Copy Number Vignette
Jack Yu
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2010/06/05
Re: [aroma.affymetrix] re: base pair normalization in CRMAv2
Henrik Bengtsson
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2010/06/05
Re: [aroma.affymetrix] Error during Total copy number analysis using CRMA v1
Henrik Bengtsson
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2010/06/05
[aroma.affymetrix] Error during Total copy number analysis using CRMA v1
Jack
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2010/06/03
Re: [aroma.affymetrix] re: base pair normalization in CRMAv2
seth redmond
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2010/06/03
Re: [aroma.affymetrix] Re: Mouse diversity array --building the required files for aroma.affymetrix UGP, UFL
Henrik Bengtsson
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2010/06/03
[aroma.affymetrix] Re: Mouse diversity array --building the required files for aroma.affymetrix UGP, UFL
Ivanek, Robert
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2010/06/02
Re: [aroma.affymetrix] Re: Mouse diversity array --building the required files for aroma.affymetrix UGP, UFL
Henrik Bengtsson
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2010/06/02
[aroma.affymetrix] Re: Mouse diversity array --building the required files for aroma.affymetrix UGP, UFL
Ivanek, Robert
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2010/06/01
[aroma.affymetrix] Re: Mouse diversity array --building the required files for aroma.affymetrix UGP, UFL
Ivanek, Robert
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2010/06/01
Re: [aroma.affymetrix] Discussion on whole-genome-2-7m-array
Henrik Bengtsson
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2010/05/30
Re: [aroma.affymetrix] Mouse diversity array --building the required files for aroma.affymetrix UGP, UFL
Henrik Bengtsson
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2010/05/28
Re: [aroma.affymetrix] re: base pair normalization in CRMAv2
Henrik Bengtsson
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2010/05/27
[aroma.affymetrix] Discussion on whole-genome-2-7m-array
Steve Newhouse
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2010/05/26
[aroma.affymetrix] Mouse diversity array --building the required files for aroma.affymetrix UGP, UFL
Ivanek, Robert
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2010/05/18
[aroma.affymetrix] Re: NmfSnpPlm question: rlm failed to converge
mortiz
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2010/05/18
Re: [aroma.affymetrix] Suggestions for multiple processing jobs of the same platform (Affymetrix SNP chips)
Henrik Bengtsson
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2010/05/17
[aroma.affymetrix] NmfSnpPlm question: rlm failed to converge
Tae-Hoon Chung
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2010/05/17
[aroma.affymetrix] Suggestions for multiple processing jobs of the same platform (Affymetrix SNP chips)
Tae-Hoon Chung
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2010/05/17
[aroma.affymetrix] aroma.affymetrix v1.6.0 released
Henrik Bengtsson
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2010/05/17
Re: [aroma.affymetrix] removal of bad quality chips from a big dataset
Henrik Bengtsson
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2010/05/16
[aroma.affymetrix] Re: CRMA v2 errors
Smaug72
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2010/05/15
[aroma.affymetrix] removal of bad quality chips from a big dataset
Gabriele Zoppoli
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2010/05/14
Re: [aroma.affymetrix] Re: FIRMA and GenomeGraphs
Mark Robinson
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2010/05/14
[aroma.affymetrix] ArrayExplorer: Error in readCelHeader(pathname)
Richard Beyer
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2010/05/14
[aroma.affymetrix] Re: FIRMA and GenomeGraphs
Lara
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2010/05/14
Re: [aroma.affymetrix] Re: CRMA v2 errors
Henrik Bengtsson
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2010/05/14
Re: [aroma.affymetrix] Re: CRMA v2 errors
Markus Leber
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2010/05/13
Re: [aroma.affymetrix] FIRMA and GenomeGraphs
Mark Robinson
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2010/05/13
Re: [aroma.affymetrix] question about aroma on Affy SNPchip 6.0
Pierre Neuvial
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2010/05/13
[aroma.affymetrix] FIRMA and GenomeGraphs
Lara
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2010/05/12
[aroma.affymetrix] question about aroma on Affy SNPchip 6.0
Davide Cora'
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2010/05/12
Re: [aroma.affymetrix] Re: CRMA v2 errors
Henrik Bengtsson
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2010/05/12
[aroma.affymetrix] Re: CRMA v2 errors
Smaug72
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2010/05/11
Re: [aroma.affymetrix] CRMA v2 errors
Henrik Bengtsson
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2010/05/11
[aroma.affymetrix] CRMA v2 errors
Smaug72
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2010/05/11
Re: [aroma.affymetrix] segfault while fitting plm in copy number processing using CRMAv2 algorithm
Tae-Hoon Chung
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2010/05/11
Re: [aroma.affymetrix] segfault while fitting plm in copy number processing using CRMAv2 algorithm
Henrik Bengtsson
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2010/05/11
Re: [aroma.affymetrix] segfault while fitting plm in copy number processing using CRMAv2 algorithm
Tae-Hoon Chung
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2010/05/11
Re: [aroma.affymetrix] segfault while fitting plm in copy number processing using CRMAv2 algorithm
Henrik Bengtsson
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2010/05/11
Re: [aroma.affymetrix] segfault while fitting plm in copy number processing using CRMAv2 algorithm
Henrik Bengtsson
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2010/05/10
Re: [aroma.affymetrix] segfault while fitting plm in copy number processing using CRMAv2 algorithm
Tae-Hoon Chung
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2010/05/10
Re: [aroma.affymetrix] segfault while fitting plm in copy number processing using CRMAv2 algorithm
Henrik Bengtsson
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2010/05/10
RE: [aroma.affymetrix] segfault while fitting plm in copy number processing using CRMAv2 algorithm
Chung Tae-Hoon
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2010/05/10
Re: [aroma.affymetrix] segfault while fitting plm in copy number processing using CRMAv2 algorithm
Henrik Bengtsson
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2010/05/09
[aroma.affymetrix] segfault while fitting plm in copy number processing using CRMAv2 algorithm
Chung Tae-Hoon
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2010/05/06
Re: [aroma.affymetrix] error with extractSnpQSet
Henrik Bengtsson
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2010/05/01
[aroma.affymetrix] unsubscribe
Karl Kornacker
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2010/04/30
[aroma.affymetrix] Re: PCR fragment-length effect normalization error for Mapping250K chips
mbaudis
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2010/04/29
[aroma.affymetrix] PCR fragment-length effect normalization error for Mapping250K chips
Tae-Hoon Chung
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2010/04/29
[aroma.affymetrix] AllelicCrosstalkCalibration with CRMAv2 for Mapping250K chip question.
Chung Tae-Hoon
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2010/04/29
[aroma.affymetrix] (solved) AllelicCrosstalkCalibration with CRMAv2 for Mapping250K chip question.
Tae-Hoon Chung
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2010/04/28
[aroma.affymetrix] error with extractSnpQSet
Nolwenn Le Meur
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2010/04/26
Re: [aroma.affymetrix] Re: time to read the sequences of one chromosome in GWS6.0
Henrik Bengtsson
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2010/04/23
[aroma.affymetrix] Data Available?
Peter Sherick
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2010/04/23
[aroma.affymetrix] RE: PdInfo2Cdf function
Hooiveld, Guido
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2010/04/23
[aroma.affymetrix] RE: PdInfo2Cdf function
Hooiveld, Guido
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2010/04/23
Re: [aroma.affymetrix] failure of AllelicCrosstalkCalibration on R-2.11
Henrik Bengtsson
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2010/04/23
RE: [aroma.affymetrix] failure of AllelicCrosstalkCalibration on R-2.11
Karl Kornacker
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2010/04/23
Re: [aroma.affymetrix] failure of AllelicCrosstalkCalibration on R-2.11
Henrik Bengtsson
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2010/04/23
RE: [aroma.affymetrix] failure of AllelicCrosstalkCalibration on R-2.11
Karl Kornacker
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2010/04/23
Re: [aroma.affymetrix] failure of AllelicCrosstalkCalibration on R-2.11
Henrik Bengtsson
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2010/04/23
Re: [aroma.affymetrix] quantile normalisation - what to expect?
Henrik Bengtsson
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2010/04/22
RE: [aroma.affymetrix] failure of AllelicCrosstalkCalibration on R-2.11
Karl Kornacker
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2010/04/22
Re: [aroma.affymetrix] failure of AllelicCrosstalkCalibration on R-2.11
Henrik Bengtsson
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2010/04/22
[aroma.affymetrix] failure of AllelicCrosstalkCalibration on R-2.11
Karl Kornacker
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2010/04/22
[aroma.affymetrix] quantile normalisation - what to expect?
mike dewar
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2010/04/21
[aroma.affymetrix] RE: PdInfo2Cdf function
Hooiveld, Guido
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2010/04/21
Re: [aroma.affymetrix] Error ExtractDataFrame
Henrik Bengtsson
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2010/04/21
[aroma.affymetrix] Error ExtractDataFrame
elodie
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2010/04/20
[aroma.affymetrix] Re: time to read the sequences of one chromosome in GWS6.0
mortiz
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2010/04/20
[aroma.affymetrix] Re: time to read the sequences of one chromosome in GWS6.0
mortiz
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2010/04/20
[aroma.affymetrix] Re: time to read the sequences of one chromosome in GWS6.0
mortiz
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2010/04/20
Re: [aroma.affymetrix] time to read the sequences of one chromosome in GWS6.0
Henrik Bengtsson
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2010/04/20
[aroma.affymetrix] time to read the sequences of one chromosome in GWS6.0
mortiz
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2010/04/15
Re: [aroma.affymetrix] problem with gcrma using HG-U133_Plus_2 CDF from affymetrix
Henrik Bengtsson
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2010/04/15
[aroma.affymetrix] problem with gcrma using HG-U133_Plus_2 CDF from affymetrix
step...@mnemosyne.co.uk
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2010/04/11
Re: [aroma.affymetrix] Re: Question for custom CDF of ST-Array
Henrik Bengtsson
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2010/04/08
[aroma.affymetrix] Re: GCRMA normalization with MoEx-1_0-st-v1
Gil Tomás
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2010/04/07
[aroma.affymetrix] Re: Question for custom CDF of ST-Array
tokuyasu
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2010/04/07
Re: [aroma.affymetrix] Re: GCRMA normalization with MoEx-1_0-st-v1
Henrik Bengtsson
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2010/04/07
Re: [aroma.affymetrix] Re: saturated Affy 500K SNP array signals? Followup: some stats
Henrik Bengtsson
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2010/04/02
[aroma.affymetrix] Re: what kind of file
dkny169
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2010/04/01
Re: [aroma.affymetrix] Re: what kind of file
Mark Robinson
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2010/04/01
[aroma.affymetrix] Re: what kind of file
dkny169
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2010/03/31
[aroma.affymetrix] Re: GCRMA normalization with MoEx-1_0-st-v1
Gil Tomás
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2010/03/31
Re: [aroma.affymetrix] Re: GCRMA normalization with MoEx-1_0-st-v1
Henrik Bengtsson
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2010/03/30
[aroma.affymetrix] Re: saturated Affy 500K SNP array signals? Followup: some stats
Louie
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2010/03/30
[aroma.affymetrix] Re: GCRMA normalization with MoEx-1_0-st-v1
Gil Tomás
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2010/03/29
[aroma.affymetrix] FYI: If the aroma.affymetrix mailing list goes down...
Henrik Bengtsson
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2010/03/27
Re: [aroma.affymetrix] Alternatives to quantile normalization? (Was: Re: [aroma.affymetrix] ProbeLevelTransform subclasses: how to use)
Henrik Bengtsson
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2010/03/27
Re: [aroma.affymetrix] saturated Affy 500K SNP array signals?
Henrik Bengtsson
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2010/03/26
Re: [aroma.affymetrix] Alternatives to quantile normalization? (Was: Re: [aroma.affymetrix] ProbeLevelTransform subclasses: how to use)
Henrik Bengtsson
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2010/03/25
Re: [aroma.affymetrix] Re: GCRMA normalization with MoEx-1_0-st-v1
Henrik Bengtsson
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2010/03/25
Re: [aroma.affymetrix] Alternatives to quantile normalization? (Was: Re: [aroma.affymetrix] ProbeLevelTransform subclasses: how to use)
Henrik Bengtsson
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2010/03/25
Re: [aroma.affymetrix] ProbeLevelTransform subclasses: how to use
Richard Beyer
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2010/03/25
Re: [aroma.affymetrix] Is it correct to do analyze different expression data based on the same platform on the same time?
Henrik Bengtsson
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2010/03/25
[aroma.affymetrix] Re: GCRMA normalization with MoEx-1_0-st-v1
Gil Tomás
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2010/03/25
Re: [aroma.affymetrix] ProbeLevelTransform subclasses: how to use
Henrik Bengtsson
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2010/03/25
Re: [aroma.affymetrix] GCRMA normalization with MoEx-1_0-st-v1
Henrik Bengtsson
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2010/03/24
[aroma.affymetrix] ProbeLevelTransform subclasses: how to use
dbe...@u.washington.edu
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2010/03/24
[aroma.affymetrix] GCRMA normalization with MoEx-1_0-st-v1
Gil Tomás
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2010/03/18
Re: [aroma.affymetrix] Re: FIRMAGene command
Mark Robinson
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2010/03/18
[aroma.affymetrix] Re: FIRMAGene command
dkny169
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2010/03/18
Re: [aroma.affymetrix] Re: FIRMAGene command
Henrik Bengtsson
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2010/03/18
[aroma.affymetrix] Re: FIRMAGene command
dkny169
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2010/03/16
Re: [aroma.affymetrix] Is the PdInfo2Cdf.R script working
Mark Robinson
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2010/03/16
[aroma.affymetrix] Is the PdInfo2Cdf.R script working
Peter White
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2010/03/16
Re: [aroma.affymetrix] FIRMAGene command
Mark Robinson
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2010/03/16
Re: [aroma.affymetrix] what kind of file
Mark Robinson
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2010/03/16
Re: [aroma.affymetrix] getUniqueCdf inflates dimensions of original cdf
Mark Robinson
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2010/03/15
Re: [aroma.affymetrix] getUniqueCdf inflates dimensions of original cdf
Henrik Bengtsson
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2010/03/13
[aroma.affymetrix] Is it correct to do analyze different expression data based on the same platform on the same time?
Yong
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2010/03/13
[aroma.affymetrix] FIRMAGene command
dkny169
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2010/03/12
[aroma.affymetrix] what kind of file
dkny169
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2010/03/12
[aroma.affymetrix] FIRMAGene
dkny169
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2010/03/12
[aroma.affymetrix] getUniqueCdf inflates dimensions of original cdf
stvjc
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2010/03/10
[aroma.affymetrix] Discussion on creating-cdf-files-from-scratch
pwhiteusa
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2010/03/10
[aroma.affymetrix] Help with creating a CDF from PDInfoBuilder Library
Peter White
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2010/03/10
Re: [aroma.affymetrix] Re: can't load CDF file
Henrik Bengtsson
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2010/03/10
[aroma.affymetrix] Re: can't load CDF file
dkny169
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2010/03/09
Re: [aroma.affymetrix] Re: can't load CDF file
Henrik Bengtsson
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2010/03/09
[aroma.affymetrix] Re: can't load CDF file
dkny169
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2010/03/09
Re: [aroma.affymetrix] Re: can't load CDF file
Henrik Bengtsson
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2010/03/09
[aroma.affymetrix] Re: can't load CDF file
dkny169
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2010/03/09
[aroma.affymetrix] Discussion on creating-cdf-files-from-r-packages-environments
pwhiteusa
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2010/03/09
Re: [aroma.affymetrix] can't load CDF file
Mark Robinson
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2010/03/09
[aroma.affymetrix] can't load CDF file
danieladna
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2010/03/09
[aroma.affymetrix] Exon-junction microarrays
Ana R. Grosso
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2010/03/08
Re: [aroma.affymetrix] re: monocell with > 1
Henrik Bengtsson
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2010/03/08
Re: [aroma.affymetrix] re: monocell with > 1
Henrik Bengtsson
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2010/03/08
Re: [aroma.affymetrix] re: monocell with > 1
seth redmond
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2010/03/08
Re: [aroma.affymetrix] re: monocell with > 1
Henrik Bengtsson