Hi, I've used aroma.affymetrix to generate and extract the probeset summaries (chip effects) from a set of Human Exon array samples I have. And then performed batch adjustment on these probeset summaries using another R script (ComBat.R). Now I got the adjusted probeset values and I was running whether it was possible to feed these into firma again to use?
I can't figure out how to load external RMA data into the aroma.affymetrix package, Any help would be greatly appreciated. -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to firstname.lastname@example.org To unsubscribe and other options, go to http://www.aroma-project.org/forum/