aroma-affymetrix
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Re: [aroma.affymetrix] Aroma Affymetrix shell variable path?
Pierre Neuvial
[aroma.affymetrix] Re: Aroma Affymetrix shell variable path?
Fong
[aroma.affymetrix] Append function
Ajanthah Sangaralingam
Re: [aroma.affymetrix] Append function
Henrik Bengtsson
Re: [aroma.affymetrix] Append function
Henrik Bengtsson
Re: [aroma.affymetrix] Append function
Ajanthah Sangaralingam
Re: [aroma.affymetrix] Append function
Henrik Bengtsson
[aroma.affymetrix] Human Exon CDF
Fong
Re: [aroma.affymetrix] Human Exon CDF
Henrik Bengtsson
[aroma.affymetrix] Error with AllelicCrosstalkCalibration and process
Emilie_Sohier
Re: [aroma.affymetrix] Error with AllelicCrosstalkCalibration and process
Henrik Bengtsson
Re: [aroma.affymetrix] Error with AllelicCrosstalkCalibration and process
Emilie Sohier
[aroma.affymetrix] Re: Error with AllelicCrosstalkCalibration and process
Emilie_Sohier
[aroma.affymetrix] Re: Error with AllelicCrosstalkCalibration and process
Emilie_Sohier
[aroma.affymetrix] Error with extractRawCopyNumbers
Emilie_Sohier
Re: [aroma.affymetrix] Error with extractRawCopyNumbers
Henrik Bengtsson
Re: Averaging replicated tumor-normal CN ratios? (Was: Re: [aroma.affymetrix] AromaUnitTotalCnBinarySet Manipulation)
Henrik Bengtsson
[aroma.affymetrix] Modify Chromosome Explorer plotting functions
Kai
Re: [aroma.affymetrix] Modify Chromosome Explorer plotting functions
Henrik Bengtsson
[aroma.affymetrix] need to find an archived version of "aroma" which will work with the "kth" package
Scott Ochsner
Re: [aroma.affymetrix] need to find an archived version of "aroma" which will work with the "kth" package
James F. Reid
[aroma.affymetrix] Re: need to find an archived version of "aroma" which will work with the "kth" package
Scott Ochsner
Re: [aroma.affymetrix] Re: need to find an archived version of "aroma" which will work with the "kth" package
Henrik Bengtsson
[aroma.affymetrix] Error in loadNamespace(name) : there is no package called 'png'
Richard Beyer
[aroma.affymetrix] Re: Error in loadNamespace(name) : there is no package called 'png'
Richard Beyer
Re: [aroma.affymetrix] Re: Error in loadNamespace(name) : there is no package called 'png'
Henrik Bengtsson
[aroma.affymetrix] AromaUnitTotalCnBinarySet Manipulation
Gregory W
[aroma.affymetrix] Re: AromaUnitTotalCnBinarySet Manipulation
greg . d . wall
[aroma.affymetrix] Problem with naïve genotyping (TumorBoost vignette)
Oscar Rueda
Re: [aroma.affymetrix] Problem with naïve genotyping (TumorBoost vignette)
Henrik Bengtsson
Re: [aroma.affymetrix] Problem with naïve genotyping (TumorBoost vignette)
Oscar Rueda
Re: [aroma.affymetrix] Problem with naïve genotyping (TumorBoost vignette)
Henrik Bengtsson
Re: [aroma.affymetrix] Problem with naïve genotyping (TumorBoost vignette)
Henrik Bengtsson
Re: [aroma.affymetrix] Problem with naïve genotyping (TumorBoost vignette)
Oscar Rueda
Re: [aroma.affymetrix] Problem with naïve genotyping (TumorBoost vignette)
Henrik Bengtsson
Re: [aroma.affymetrix] Problem with naïve genotyping (TumorBoost vignette)
Oscar Rueda
Re: [aroma.affymetrix] Problem with naïve genotyping (TumorBoost vignette)
Henrik Bengtsson
[aroma.affymetrix] aroma.affymetrix v2.0.0 released
Henrik Bengtsson
[aroma.affymetrix] probe sequence files
Jungmin
Re: [aroma.affymetrix] probe sequence files
Henrik Bengtsson
[aroma.affymetrix] problems with CbsModel analyzing Mapping250_Nsp and Sty data
mortiz
Re: [aroma.affymetrix] problems with CbsModel analyzing Mapping250_Nsp and Sty data
Henrik Bengtsson
[aroma.affymetrix] Re: problems with CbsModel analyzing Mapping250_Nsp and Sty data
mortiz
Re: [aroma.affymetrix] Re: problems with CbsModel analyzing Mapping250_Nsp and Sty data
Henrik Bengtsson
[aroma.affymetrix] Re: problems with CbsModel analyzing Mapping250_Nsp and Sty data
mortiz
Re: [aroma.affymetrix] Re: problems with CbsModel analyzing Mapping250_Nsp and Sty data
Henrik Bengtsson
[aroma.affymetrix] Extract raw data for core transcripts from EXON arrays
Anbarasu L A
Re: [aroma.affymetrix] Extract raw data for core transcripts from EXON arrays
Mark Robinson
[aroma.affymetrix] Error message: Exception: Something is wrong with the data. Too many non-finite values
Mete Civelek
Re: [aroma.affymetrix] Error message: Exception: Something is wrong with the data. Too many non-finite values
Henrik Bengtsson
[aroma.affymetrix] Problem setting up dataset with AffymetrixCelSet$byName
Sake van Pelt
Re: [aroma.affymetrix] Problem setting up dataset with AffymetrixCelSet$byName
Henrik Bengtsson
Re: [aroma.affymetrix] Problem setting up dataset with AffymetrixCelSet$byName
Henrik Bengtsson
[aroma.affymetrix] Re: Problem setting up dataset with AffymetrixCelSet$byName
Sake van Pelt
[aroma.affymetrix] GWS_6 hg19
Mete Civelek
[aroma.affymetrix] Re: GWS_6 hg19
cstratowa
Re: [aroma.affymetrix] Re: GWS_6 hg19
Henrik Bengtsson
[aroma.affymetrix] Re: GWS_6 hg19
cstratowa
Re: [aroma.affymetrix] Re: GWS_6 hg19
Henrik Bengtsson
[aroma.affymetrix] Re: GWS_6 hg19
cstratowa
Re: [aroma.affymetrix] Re: GWS_6 hg19
Henrik Bengtsson
[aroma.affymetrix] Re: GWS_6 hg19
cstratowa
Re: Understanding probe types, e.g. PM (Was: Re: [aroma.affymetrix] understanding probe tags)
Henrik Bengtsson
Re: Understanding probe types, e.g. PM (Was: Re: [aroma.affymetrix] understanding probe tags)
Taku Tokuyasu
[aroma.affymetrix] understanding probe tags
Taku Tokuyasu
[aroma.affymetrix] exploratory analysis
Diya Vaka
Re: [aroma.affymetrix] exploratory analysis
Henrik Bengtsson
[aroma.affymetrix] writeCdf.AffyGenePDInfo Error in order(u$atom): argument 1 is not a vector
Sake van Pelt
[aroma.affymetrix] Re: writeCdf.AffyGenePDInfo Error in order(u$atom): argument 1 is not a vector
Sake van Pelt
Re: [aroma.affymetrix] writeCdf.AffyGenePDInfo Error in order(u$atom): argument 1 is not a vector
Henrik Bengtsson
[aroma.affymetrix] Re: writeCdf.AffyGenePDInfo Error in order(u$atom): argument 1 is not a vector
Sake van Pelt
Re: [aroma.affymetrix] Re: writeCdf.AffyGenePDInfo Error in order(u$atom): argument 1 is not a vector
Henrik Bengtsson
RE: [aroma.affymetrix] Re: writeCdf.AffyGenePDInfo Error in order(u$atom): argument 1 is not a vector
Hooiveld, Guido
[aroma.affymetrix] Pooled Reference vs Paired Analysis
Gregory W
Re: [aroma.affymetrix] Pooled Reference vs Paired Analysis
Henrik Bengtsson
[aroma.affymetrix] Re: Pooled Reference vs Paired Analysis
Gregory W
[aroma.affymetrix] Gene 1.0 ST analysis with Aroma
MaximB
[aroma.affymetrix] Recommendations on re-running on a subset of samples
Taku Tokuyasu
Re: [aroma.affymetrix] Recommendations on re-running on a subset of samples
Henrik Bengtsson
[aroma.affymetrix] Re: Recommendations on re-running on a subset of samples
Taku Tokuyasu
[aroma.affymetrix] To many segments and QC in SNP6 analysis
cruckert
Re: [aroma.affymetrix] To many segments and QC in SNP6 analysis
Henrik Bengtsson
[aroma.affymetrix] Re: CN analysis with Nsp+Sty chips with pooled reference? (Was: Re: Aroma.affymetrix package: annotate copy number estimate with SNPs and Gene names)
Henrik Bengtsson
[aroma.affymetrix] Load Already Preprocessed Arrays
Gregory W
Re: [aroma.affymetrix] Load Already Preprocessed Arrays
Henrik Bengtsson
[aroma.affymetrix] Re: Aroma.affymetrix package: annotate copy number estimate with SNPs and Gene names
Henrik Bengtsson
[aroma.affymetrix] Re: Aroma.affymetrix package: annotate copy number estimate with SNPs and Gene names
Henrik Bengtsson
[aroma.affymetrix] CRMA v2 failed at FragmentLengthNormalization for Mouse diversity array
yupu
Re: [aroma.affymetrix] CRMA v2 failed at FragmentLengthNormalization for Mouse diversity array
Henrik Bengtsson
[aroma.affymetrix] Re: CRMA v2 failed at FragmentLengthNormalization for Mouse diversity array
yupu
Re: [aroma.affymetrix] Re: CRMA v2 failed at FragmentLengthNormalization for Mouse diversity array
Henrik Bengtsson
[aroma.affymetrix] aroma.affymetrix v1.9.0 released
Henrik Bengtsson
[aroma.affymetrix] identify highly expressed genes
kraman
[aroma.affymetrix] Re: identify highly expressed genes
kraman
[aroma.affymetrix] Generating regions.xls from CBS and GLAD
Kai
Re: [aroma.affymetrix] Generating regions.xls from CBS and GLAD
Henrik Bengtsson
[aroma.affymetrix] Running FIRMA on HG-U133 Plus 2.0 Arrays
Fong
Re: [aroma.affymetrix] Running FIRMA on HG-U133 Plus 2.0 Arrays
Mark Robinson
[aroma.affymetrix] Re: Running FIRMA on HG-U133 Plus 2.0 Arrays
Fong
[aroma.affymetrix] Firma score help
sabrina
Re: [aroma.affymetrix] Firma score help
Mark Robinson
[aroma.affymetrix] Questions on GLAD model
Kai
Re: [aroma.affymetrix] Questions on GLAD model
Henrik Bengtsson
[aroma.affymetrix] Re: Questions on GLAD model
Kai
Re: [aroma.affymetrix] Re: Questions on GLAD model
Henrik Bengtsson
[aroma.affymetrix] Probe Location
Gregory W
[aroma.affymetrix] Re: Probe Location
Gregory W
Re: [aroma.affymetrix] Re: Probe Location
Henrik Bengtsson
[aroma.affymetrix] NA values in fracB
allab
Re: [aroma.affymetrix] NA values in fracB
Henrik Bengtsson
[aroma.affymetrix] Incorrect Number of Probes to Probesets?
Fong
[aroma.affymetrix] Re: Incorrect Number of Probes to Probesets?
Fong
Re: [aroma.affymetrix] Re: Incorrect Number of Probes to Probesets?
Henrik Bengtsson
[aroma.affymetrix] processing time increase when sample annotation files (*.saf) are present under 'annotationData/samples'
James F. Reid
Re: [aroma.affymetrix] processing time increase when sample annotation files (*.saf) are present under 'annotationData/samples'
Henrik Bengtsson
[aroma.affymetrix] fracB and BAF values
allab
Re: [aroma.affymetrix] fracB and BAF values
Pierre Neuvial
Re: [aroma.affymetrix] fracB and BAF values
Henrik Bengtsson
[aroma.affymetrix] Parallel Processing
Gregory W
Re: [aroma.affymetrix] Parallel Processing
Henrik Bengtsson
Re: [aroma.affymetrix] Parallel Processing
Greg Wall
[aroma.affymetrix] problems installing ebimage on unix
kraman
Re: [aroma.affymetrix] problems installing ebimage on unix
Henrik Bengtsson
[aroma.affymetrix] GenomeWideSNP_6 hg19
Hans-Ulrich
Re: [aroma.affymetrix] GenomeWideSNP_6 hg19
Henrik Bengtsson
[aroma.affymetrix] Re: GenomeWideSNP_6 hg19
Hans-Ulrich
Re: [aroma.affymetrix] Re: GenomeWideSNP_6 hg19
Henrik Bengtsson
[aroma.affymetrix] bug in function pdInfo2Cdf
Hooiveld, Guido
Re: [aroma.affymetrix] bug in function pdInfo2Cdf
Henrik Bengtsson
Re: Processing 50+50K chip set? (Was: Re: [aroma.affymetrix])
Henrik Bengtsson
[aroma.affymetrix] Aroma.affymetrix vs. Affymetrix Powertools
Sebastian Schönherr
Re: [aroma.affymetrix] Aroma.affymetrix vs. Affymetrix Powertools
Henrik Bengtsson
[aroma.affymetrix] Re: Aroma.affymetrix vs. Affymetrix Powertools
Sebastian Schönherr
[aroma.affymetrix] Re: Aroma.affymetrix vs. Affymetrix Powertools
Sebastian Schönherr
[aroma.affymetrix] Re: Aroma.affymetrix vs. Affymetrix Powertools
Sebastian Schönherr
Re: [aroma.affymetrix] Re: Aroma.affymetrix vs. Affymetrix Powertools
Henrik Bengtsson
[aroma.affymetrix] Help Regarding GCRMA Human Exon.
Prithish Banerjee
Re: [aroma.affymetrix] Help Regarding GCRMA Human Exon.
Henrik Bengtsson
[aroma.affymetrix]
Yan Jiao
Re: [aroma.affymetrix] Help Regarding GCRMA Human Exon.
Prithish Banerjee
Re: [aroma.affymetrix] Help Regarding GCRMA Human Exon.
Henrik Bengtsson
[aroma.affymetrix] parallel computing with aroma copy number segmentation
Kai
Re: [aroma.affymetrix] parallel computing with aroma copy number segmentation
Henrik Bengtsson
[aroma.affymetrix] Re: parallel computing with aroma copy number segmentation
Kai
Re: [aroma.affymetrix] parallel computing with aroma copy number segmentation
Andrew Smith
Re: [aroma.affymetrix] parallel computing with aroma copy number segmentation
Henrik Bengtsson
Re: [aroma.affymetrix] parallel computing with aroma copy number segmentation
Andrew Smith
[aroma.affymetrix] dynamic reports
kraman
Re: [aroma.affymetrix] dynamic reports
Henrik Bengtsson
[aroma.affymetrix] Re: dynamic reports
kraman
[aroma.affymetrix] mails from aroma-affymetrix mailing list
As Phodel
[aroma.affymetrix] Mouse430_2 CDF Location
Dario Strbenac
Re: [aroma.affymetrix] Mouse430_2 CDF Location
Mark Cowley
[aroma.affymetrix] libgsl-0.dll missing error
Yan Jiao
Re: [aroma.affymetrix] libgsl-0.dll missing error
Henrik Bengtsson
RE: [aroma.affymetrix] libgsl-0.dll missing error
Yan Jiao
Re: [aroma.affymetrix] libgsl-0.dll missing error
Henrik Bengtsson
RE: [aroma.affymetrix] libgsl-0.dll missing error
Yan Jiao
Re: [aroma.affymetrix] libgsl-0.dll missing error
Henrik Bengtsson
[aroma.affymetrix] Copy number segmentation result
Yan Jiao
Re: [aroma.affymetrix] Copy number segmentation result
Pierre Neuvial
RE: [aroma.affymetrix] libgsl-0.dll missing error
Yan Jiao
Re: [aroma.affymetrix] libgsl-0.dll missing error
Henrik Bengtsson
Re: [aroma.affymetrix] libgsl-0.dll missing error
Henrik Bengtsson
[aroma.affymetrix] DNAcopy parameter
Yan Jiao
Re: [aroma.affymetrix] DNAcopy parameter
Pierre Neuvial
Re: [aroma.affymetrix] DNAcopy parameter
Henrik Bengtsson
[aroma.affymetrix] DNA segmentation result
Yan Jiao
Re: [aroma.affymetrix] DNA segmentation result
Pierre Neuvial
RE: [aroma.affymetrix] DNA segmentation result
Yan Jiao
RE: [aroma.affymetrix] DNA segmentation result
Yan Jiao
RE: [aroma.affymetrix] DNA segmentation result
Yan Jiao
Re: [aroma.affymetrix] DNA segmentation result
Henrik Bengtsson
[aroma.affymetrix] DNA segmentation error: sfit error
Yan Jiao
Re: [aroma.affymetrix] DNA segmentation error: sfit error
Henrik Bengtsson
[aroma.affymetrix] DNA segmentation error: DNAcopy error
Yan Jiao
Re: [aroma.affymetrix] DNA segmentation error: DNAcopy error
Henrik Bengtsson
[aroma.affymetrix] subselect samples for segmentation
Yan Jiao
Re: [aroma.affymetrix] subselect samples for segmentation
Pierre Neuvial
[aroma.affymetrix] doCRMAv1 running time
Yan Jiao
Re: [aroma.affymetrix] doCRMAv1 running time
Henrik Bengtsson
Re: [aroma.affymetrix] Re: Could not locate a file for this chip type: Mapping50K_Hind240 (Was: FW:)
Henrik Bengtsson
Re: [aroma.affymetrix] Re: Could not locate a file for this chip type: Mapping50K_Hind240 (Was: FW:)
Henrik Bengtsson
[aroma.affymetrix] FW:
Yan Jiao
[aroma.affymetrix] error with fit() Mouse Exon
Richard Beyer
Re: [aroma.affymetrix] error with fit() Mouse Exon
Henrik Bengtsson
Re: [aroma.affymetrix] error with fit() Mouse Exon
Richard Beyer
[aroma.affymetrix] EBImage issue
Elsa Chacko
Re: [aroma.affymetrix] EBImage issue
Henrik Bengtsson
[aroma.affymetrix] Re: EBImage issue
Elsa Chacko
Re: [aroma.affymetrix] Re: EBImage issue
Henrik Bengtsson
[aroma.affymetrix] Re: EBImage issue
Elsa Chacko
Re: [aroma.affymetrix] Re: EBImage issue
Henrik Bengtsson
[aroma.affymetrix] FYI: The aroma project website will be down part of the day tomorrow Saturday Nov 14
Henrik Bengtsson
[aroma.affymetrix] Installing aroma.affymetrix v1.8.0: Retry now if it didn't update before
Henrik Bengtsson
[aroma.affymetrix] problems with sfit on Windows for CRMAv2 analysis
Johan Staaf
Re: [aroma.affymetrix] problems with sfit on Windows for CRMAv2 analysis
Henrik Bengtsson
Re: [aroma.affymetrix] problems with sfit on Windows for CRMAv2 analysis
Johan Staaf
[aroma.affymetrix] No write permissions error
Elsa Chacko
Re: [aroma.affymetrix] No write permissions error
Henrik Bengtsson
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