Dear Paola,
I am ccing this to the google groups because this is where you will get
faster response. There are mouse cdfs on the aroma.affymetrix page
http://www.aroma-project.org/chipTypes/MoEx-1_0-st-v1
Best,
Elizabeth
Paola Favaretto wrote:
Hello,
I am interested in running FIRMA on a set of Mouse exon arrays. The
unsupported, standard cdf file from Affymetrix is MoEx-1_0-st-v1.cdf.
If I am not misunderstanding the information on the aroma-project.org
website, it is highly recommended the use of custom cdf files (which
are available for Human but not for mouse on the website itself).
Where can I find a custom cdf file for mouse? If not currently
available, can you provide some guidance on how to obtain it from the
standard Affymetrix file? Alternatively, can I use the cdf files
provided with exonMap (deprived of background and control probesets)?
Thanks in advance for you help on this matter,
Paola
--
Elizabeth Purdom
Assistant Professor
Department of Statistics
UC, Berkeley
Office: 433 Evans Hall
(510) 642-6154 (office)
(510) 642-7892 (fax)
Mailing: 367 Evans Hall Berkeley, CA 94720-3860
epur...@stat.berkeley.edu
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